Information for 20-TTAGGCACAA (Motif 33)

A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A
Reverse Opposite:
C G A T A C G T T A C G A G C T T A C G A G T C A G T C A C G T C G T A C G T A
p-value:1e-8
log p-value:-2.032e+01
Information Content per bp:1.861
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.98%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 22.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTAGGCACAA---
TNNATTATGCATANNTT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A A C G T A C G T A C G T
G C A T G C A T G A C T G T C A C G A T C G A T C G T A A G C T C A T G G T A C C T G A C G A T C T G A G C A T G A C T C G A T C G A T

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTAGGCACAA--
NNNNTTGGGCACNNCN
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A A C G T A C G T
A G T C G A T C C A G T G C A T G C A T C A G T A C T G A C T G A C T G A G T C C G T A G A T C G T C A G T A C T A G C G T A C

NFIA/MA0670.1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-TTAGGCACAA
NNTTGGCANN-
 A C G T A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A
G C T A A G T C A C G T A C G T A C T G A C T G A G T C C G T A G T A C A G T C A C G T

Barhl1/MA0877.1/Jaspar

Match Rank:4
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TTAGGCACAA
NNCAATTANN-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A
T C G A T A C G G A T C T C G A G C T A G A C T G C A T C G T A C T A G T A G C A C G T A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TTAGGCACAA---
---RNAACAATGG
 A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A A C G T A C G T A C G T
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----TTAGGCACAA-
NNAATTAGTCACGGT
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PB0063.1_Sox13_1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:TTAGGCACAA------
TTAAGAACAATAAATT
 A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C G A T G A C T C G T A C T G A C A T G C T G A C G T A G A T C C G T A C T G A G C A T C G T A C G T A C G A T G C A T G C A T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:TTAGGCACAA
CCAGGAACAG
 A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A
T A G C G T A C C G T A C T A G A C T G T G C A C G T A A T G C C G T A A T C G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TTAGGCACAA
BCMATTAG------
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T A C G T A C G T A C G T A C G T

PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer

Match Rank:10
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TTAGGCACAA
GGTTAGAGACCT
 A C G T A C G T A C G T A C G T C G T A A C T G C T A G A G T C C T G A A G T C C G T A C G T A
C T A G T A C G C G A T A C G T C G T A T C A G C T G A T C A G G T C A T G A C A G T C G A C T