Information for 16-TGTBAGYCWCAGA (Motif 18)

A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A
Reverse Opposite:
A G C T A G T C C G A T A C T G G C T A A C T G C T G A A T G C C G A T T G C A T G C A G T A C T G C A
p-value:1e-13
log p-value:-3.124e+01
Information Content per bp:1.595
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif2.07%
Number of Background Sequences with motif5.0
Percentage of Background Sequences with motif0.19%
Average Position of motif in Targets54.4 +/- 19.1bp
Average Position of motif in Background64.6 +/- 29.8bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:1
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TGTBAGYCWCAGA-
--TGAGTGACAGSC
 A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.62
Offset:7
Orientation:reverse strand
Alignment:TGTBAGYCWCAGA
-------CACAGN
 A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGTBAGYCWCAGA
-NTGATTGACAGN
 A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----TGTBAGYCWCAGA--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A A C G T A C G T
G A C T A G C T A G C T G A C T G A C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G G C A T C G A T

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----TGTBAGYCWCAGA--
TTTTTTTTTTTTTTCAGGTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A A C G T A C G T
G A C T G A C T A G C T A G C T A G C T A G C T A G C T A G C T A G C T G A C T G A C T G A C T G A C T G A C T G A T C C G T A A C T G T C A G C G A T C G A T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGTBAGYCWCAGA
-BTGABTGACAGS
 A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

RUNX1/MA0002.2/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TGTBAGYCWCAGA-
---AAACCACAGAN
 A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A A C G T
A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:TGTBAGYCWCAGA
---AAACCACAGC
 A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGTBAGYCWCAGA----
RGGTCADNNAGAGGTCAV
 A C G T A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A A C G T A C G T A C G T A C G T
C T G A C A T G A C T G A C G T A T G C C G T A C A T G T A C G A T G C G C T A T A C G C T G A C T A G A C T G A C G T A T G C C G T A T A G C

Gfi1b/MA0483.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TGTBAGYCWCAGA-
---AAATCACAGCA
 A C G T A C T G A C G T A C G T G C T A A T C G G A C T T G A C C G A T T G A C C G T A C T A G T C G A A C G T
A C G T A C G T A C G T T G C A C G T A C T G A A G C T A G T C G C T A T A G C C G T A C T A G G A T C G C T A