Information for 20-TGGGACTTGGTCA (Motif 31)

A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A
Reverse Opposite:
A C G T A C T G C G T A A G T C A G T C C G T A C G T A A C T G C G A T A G T C G T A C A G T C C G T A
p-value:1e-6
log p-value:-1.439e+01
Information Content per bp:1.934
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.42%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets23.2 +/- 4.5bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TGGGACTTGGTCA
---AAYTAGGTCA
 A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A
A C G T A C G T A C G T G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A

PB0149.1_Myb_2/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TGGGACTTGGTCA
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

RORA(var.2)/MA0072.1/Jaspar

Match Rank:3
Score:0.57
Offset:0
Orientation:forward strand
Alignment:TGGGACTTGGTCA-
TATAAGTAGGTCAA
 A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A

PB0200.1_Zfp187_2/Jaspar

Match Rank:4
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TGGGACTTGGTCA-
NNAGGGACAAGGGCNC
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A A C G T
A G C T C G A T C T G A C A T G C T A G C T A G C G T A A G T C T C G A C T G A C T A G C T A G C A T G A G T C G A C T G T A C

PB0158.1_Rfx3_2/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--TGGGACTTGGTCA--------
ACTGACCCTTGGTTACCACAAAG
 A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A A G T C A C G T A T C G G C T A A T G C T A C G A T G C G C A T C G A T T C A G A C T G C G A T C A G T C G T A G A T C T G A C T C G A T G A C T C G A T C G A C G T A A T C G

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGGGACTTGGTCA
NNATTGGACTTTNGNN
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A
C G A T C A G T G C T A C A G T G A C T C T A G C A T G G T C A G T A C A G C T G A C T G C A T C A G T C T A G T G A C T G A C

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:7
Score:0.55
Offset:7
Orientation:forward strand
Alignment:TGGGACTTGGTCA
-------AGGTCA
 A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:8
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---TGGGACTTGGTCA
GTAGGTCACTGGGTCA
 A C G T A C G T A C G T A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A
A T C G A G C T C T G A C T A G A C T G A C G T G T A C G C T A A T G C A C G T C T A G C A T G T A C G C G A T A T G C C G T A

RORA/MA0071.1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TGGGACTTGGTCA
---ATCAAGGTCA
 A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A
A C G T A C G T A C G T C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:10
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:TGGGACTTGGTCA----
--NNAATTAGTCACGGT
 A C G T A C T G A C T G A C T G C G T A A G T C A C G T C G A T C T A G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T