Information for 13-AAGCCTGACTCCCGTC (Motif 19)

C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A C T G A C T G A C T G C G T A A C T G A C G T A G T C C G T A A C T G A C T G A G T C A C G T A C G T
p-value:1e-8
log p-value:-1.998e+01
Information Content per bp:1.530
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.56%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets32.5 +/- 15.9bp
Average Position of motif in Background48.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PKNOX2/MA0783.1/Jaspar

Match Rank:1
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:AAGCCTGACTCCCGTC-
-----TGACACCTGTCA
 C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G A C T A C T G C T G A A G T C C T G A A T G C G T A C G C A T C T A G G A C T A T G C G C T A

PKNOX1/MA0782.1/Jaspar

Match Rank:2
Score:0.57
Offset:5
Orientation:reverse strand
Alignment:AAGCCTGACTCCCGTC-
-----TGACACCTGTCA
 C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C A T A T C G C G T A A G T C T C G A A T G C G T A C G A C T C A T G G A C T A T G C C T G A

PB0203.1_Zfp691_2/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:AAGCCTGACTCCCGTC--
-TACGAGACTCCTCTAAC
 C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C A C G T A C G T
A C G T C A G T C T G A A T G C A C T G C G T A C A T G C T G A A T G C A C G T A G T C T G A C A G C T G A T C C G A T T G C A G T C A T A G C

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:4
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:AAGCCTGACTCCCGTC-
--GYCTGGYYTNTGTCA
 C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C A C G T
A C G T A C G T A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

TGIF2/MA0797.1/Jaspar

Match Rank:5
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:AAGCCTGACTCCCGTC-
-----TGACAGCTGTCA
 C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C A T T A C G C T G A G A T C C T G A A T C G G T A C G A C T C T A G G A C T G A T C C G T A

TGIF1/MA0796.1/Jaspar

Match Rank:6
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:AAGCCTGACTCCCGTC-
-----TGACAGCTGTCA
 C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G C G T A A T G C T C G A A T C G T G A C A G C T T C A G A G C T A G T C C G T A

PH0164.1_Six4/Jaspar

Match Rank:7
Score:0.52
Offset:0
Orientation:forward strand
Alignment:AAGCCTGACTCCCGTC-
ATAAATGACACCTATCA
 C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C A C G T
G C T A C A G T C T G A G T C A G C T A A G C T C A T G G T C A A G T C G T C A G T A C A G T C A G C T G T C A A G C T A G T C T C G A

Nr2e3/MA0164.1/Jaspar

Match Rank:8
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AAGCCTGACTCCCGTC
AAGCTTG---------
 C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C
C G T A C G T A A C T G A T G C A C G T A C G T C T A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer

Match Rank:9
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AAGCCTGACTCCCGTC
-TGCCTGCGYCMCCTT
 C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C
A C G T C A G T A C T G A G T C A G T C A C G T A C T G A T G C C T A G A G T C G A T C G T C A A G T C A G T C G C A T A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---AAGCCTGACTCCCGTC
GTCATGCHTGRCTGS----
 A C G T A C G T A C G T C G T A C G T A A C T G A G T C A G T C A C G T A C T G C G T A A G T C A C G T A G T C A G T C A G T C A C T G A C G T A G T C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T A C G T A C G T A C G T