Information for 22-GAGTAATGGC (Motif 30)

A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C
Reverse Opposite:
A C T G A G T C A G T C C G T A A C G T A C G T C G T A A G T C A C G T A G T C
p-value:1e-5
log p-value:-1.280e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.51%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.7 +/- 13.9bp
Average Position of motif in Background28.6 +/- 3.4bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-GAGTAATGGC-
TGATTRATGGCY
 A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T
C G A T C T A G T C G A A G C T C G A T C T G A C G T A A G C T A C T G C T A G A T G C G A T C

YY2/MA0748.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:GAGTAATGGC----
---TAATGGCGGNC
 A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G C A T C T G A C G T A G C A T C T A G A C T G A T G C T A C G C T A G G C T A G A T C

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:GAGTAATGGC
--NTAATTGN
 A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A G T C A C G T C G T A C G T A A C G T A C G T C T A G A G T C

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:4
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGTAATGGC
-GKTAATGR-
 A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C
A C G T A C T G C A G T A C G T C G T A C G T A A C G T A C T G C T G A A C G T

BSX/MA0876.1/Jaspar

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GAGTAATGGC
--NTAATTGG
 A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A G C T A C G T C G T A C G T A A G C T A C G T C T A G A T C G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAGTAATGGC-
-GTTAATGGCC
 A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T
A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAGTAATGGC
TGATTGATGA-
 A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C
C G A T T C A G G T C A A G C T C G A T C T A G C G T A A C G T C A T G C T G A A C G T

Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer

Match Rank:8
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAGTAATGGC-
TGATTTATGGCC
 A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T
C G A T C T A G C G T A C G A T C G A T A C G T C T G A G A C T C A T G C T A G A T G C G A T C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GAGTAATGGC
--CTAATKGV
 A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C
A C G T A C G T A G T C C G A T C T G A C G T A A C G T C A G T T C A G T G A C

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:10
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GAGTAATGGC-
TGATTTATGGCC
 A C G T A C T G C G T A A C T G A C G T C G T A C G T A A C G T A C T G A C T G A G T C A C G T
C G A T C T A G G C T A C G A T C A G T A C G T G T C A A G C T C A T G T C A G A G T C A G T C