Information for 7-CAGCCATGGCTGC (Motif 7)

A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C
Reverse Opposite:
C A T G A T G C T C G A A C T G G A T C G T A C T G C A A G C T A C T G T A C G G T A C A C G T T A C G
p-value:1e-10
log p-value:-2.529e+01
Information Content per bp:1.742
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.55%
Number of Background Sequences with motif163.1
Percentage of Background Sequences with motif0.34%
Average Position of motif in Targets45.9 +/- 22.5bp
Average Position of motif in Background54.3 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGCCATGGCTGC
GTCATGCHTGRCTGS
 A C G T A C G T A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAGCCATGGCTGC
NGTCACGCTTGGCTGC
 A C G T A C G T A C G T A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CAGCCATGGCTGC-
TTGCCATGGCAACN
 A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C A C G T
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C

ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAGCCATGGCTGC---------
MACCTTCYATGGCTCCCTAKTGCCY
 A C G T A C G T A C G T A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
T G C A T G C A A G T C A G T C G A C T C A G T A T G C G A T C C T G A A C G T C T A G C T A G A G T C A C G T A G T C A G T C A G T C G A C T C G T A A C G T A G C T C T A G G A T C G A T C G A T C

ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGCCATGGCTGC---
-AGAAATGACTTCCCT
 A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C A C G T A C G T A C G T
A C G T C T G A C T A G T G C A C T G A T C G A A G C T C A T G T C G A A G T C G A C T A C G T A G T C G A T C G A T C G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.56
Offset:7
Orientation:reverse strand
Alignment:CAGCCATGGCTGC
-------NGCTN-
 A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G A C T G A G T C A C G T A T C G A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:7
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CAGCCATGGCTGC-
NNNGGGHAGCAHRTGCTRCC
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C A C G T
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C

RFX4/MA0799.1/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CAGCCATGGCTGC-
CGTTGCCATGGCAACG
 A C G T A C G T A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C A C G T
A T G C C T A G G C A T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A T C G A G A T C T A C G

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCATGGCTGC--
GTTGCCATGGCAACCG
 A C G T A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C A C G T A C G T
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:CAGCCATGGCTGC-
TTGCCATGGCAACC
 A T G C G T C A A C T G A G T C T A G C T C G A A C G T C A T G C A T G G T A C A C G T A T C G G T A C A C G T
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C