Information for 2-CCGCCATTTT (Motif 2)

A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T
Reverse Opposite:
T G C A G T C A T C G A C T G A C A G T A T C G A C T G G T A C C A T G T C A G
p-value:1e-53
log p-value:-1.233e+02
Information Content per bp:1.666
Number of Target Sequences with motif131.0
Percentage of Target Sequences with motif15.25%
Number of Background Sequences with motif1354.4
Percentage of Background Sequences with motif2.85%
Average Position of motif in Targets49.7 +/- 22.6bp
Average Position of motif in Background51.8 +/- 30.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY1/MA0095.2/Jaspar

Match Rank:1
Score:0.92
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATTTT-
GCNGCCATCTTG
 A C G T A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T A C G T
C A T G A G T C T G A C C A T G A G T C A G T C C T G A A C G T A G T C A G C T G A C T A C T G

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCGCCATTTT-
GCCGCCATCTTG
 A C G T A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T A C G T
C A T G G A T C A T G C C T A G A G T C A G T C C G T A A C G T A T G C A G C T A C G T A T C G

YY2/MA0748.1/Jaspar

Match Rank:3
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--CCGCCATTTT
GTCCGCCATTA-
 A C G T A C G T A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

PB0164.1_Smad3_2/Jaspar

Match Rank:4
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------CCGCCATTTT-
TACGCCCCGCCACTCTG
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T A C G T
C A G T G T C A G T A C A C T G G A T C A G T C T A G C A T G C T A C G A G T C G T A C G T C A G T A C G A C T A G T C G A C T A C T G

E2F2/MA0864.1/Jaspar

Match Rank:5
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CCGCCATTTT
AAAATGGCGCCATTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T
C G T A C G T A C G T A C G T A C G A T A T C G A C T G A G T C A C T G A G T C T A G C G C T A G C A T C G A T C G A T C G A T

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCGCCATTTT---
---CCATTGTTYB
 A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A T G C G A T C C G T A A G C T C A G T A T C G G C A T A G C T G A C T A C T G

E2F3/MA0469.2/Jaspar

Match Rank:7
Score:0.65
Offset:-7
Orientation:reverse strand
Alignment:-------CCGCCATTTT-
AAAAATGGCGCCATTTTT
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T A C G T
T C G A T C G A C G T A G C T A C G T A C A G T A T C G A C T G A T G C A C T G A T G C T A G C G T C A G C A T C G A T G C A T A G C T G A C T

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCGCCATTTT-
---CCTTTGTT
 A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T A C G T
A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T

PB0132.1_Hbp1_2/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--CCGCCATTTT-----
TGTTCCCATTGTGTACT
 A C G T A C G T A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T A C G T A C G T A C G T A C G T A C G T
C G A T C T A G C A G T A G C T A G T C G A T C G A T C C G T A G A C T C G A T C A T G C A G T T C A G G A C T C T G A A T G C G C A T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCGCCATTTT--
--NCCATTGTTY
 A G T C G T A C C A T G T G A C T A G C G T C A G A C T A G C T C A G T A C G T A C G T A C G T
A C G T A C G T C T A G A G T C G A T C G C T A C G A T A C G T A T C G A C G T A G C T G A C T