Information for 7-CTCCACACACAGMATA (Motif 15)

A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
Reverse Opposite:
C G A T G C T A A C G T A C T G A G T C A C G T A T C G A G C T A T C G A C G T C T A G A C G T A C T G C A T G C T G A A C T G
p-value:1e-7
log p-value:-1.798e+01
Information Content per bp:1.719
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.28%
Number of Background Sequences with motif58.9
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets41.4 +/- 25.8bp
Average Position of motif in Background48.7 +/- 25.2bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CTCCACACACAGMATA
-GCCACACCCA-----
 A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
A C G T C T A G G T A C A G T C T G C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CTCCACACACAGMATA
---AAACCACAGAN--
 A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
A C G T A C G T A C G T G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:3
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CTCCACACACAGMATA
GGCCACACCCAN----
 A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
C T A G C T A G T G A C A G T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C T G A C G T A C G T A C G T A C G T

PB0166.1_Sox12_2/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTCCACACACAGMATA
AAACAGACAAAGGAAT
 A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0060.1_Smad3_1/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CTCCACACACAGMATA
CAAATCCAGACATCACA--
 A C G T A C G T A C G T A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A A C G T A C G T

Klf1/MA0493.1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTCCACACACAGMATA
GGCCACACCCA-----
 A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
C T A G T C A G T G A C G A T C G T C A A G T C C T G A A G T C A G T C A G T C G C T A A C G T A C G T A C G T A C G T A C G T

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:7
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTCCACACACAGMATA
--NWAACCACADNN--
 A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C A C G T A C G T

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTCCACACACAGMATA
AGCGGCACACACGCAA--
 A C G T A C G T A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:9
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CTCCACACACAGMATA
---AAACCACAGC---
 A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A
A C G T A C G T A C G T G C T A T C G A T G C A T G A C G T A C T G C A A G T C C T G A C T A G T G A C A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTCCACACACAGMATA--
--CGAAGCACACAAAATA
 A G T C A G C T G T A C A G T C G T C A G A T C G T C A A T G C C T G A A T G C C G T A C T A G T G A C G T C A C A G T C G T A A C G T A C G T
A C G T A C G T G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A