Information for 11-KATMWKCTKMCAAAGG (Motif 19)

A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G
Reverse Opposite:
A G T C A G T C A C G T A C G T A C G T A C T G C A G T G T A C C G T A A C T G G T C A C G A T A C G T C G T A A G C T G T A C
p-value:1e-9
log p-value:-2.240e+01
Information Content per bp:1.837
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.75%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.6 +/- 24.5bp
Average Position of motif in Background32.4 +/- 6.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.65
Offset:8
Orientation:reverse strand
Alignment:KATMWKCTKMCAAAGG
--------AACAAAGG
 A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:2
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:KATMWKCTKMCAAAGG
--------RACAAWGG
 A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:KATMWKCTKMCAAAGG
-ATTTGCATACAATGG
 A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G
A C G T G T C A A G C T G A C T C G A T T C A G T G A C C G T A G A C T C G T A A T G C C G T A C G T A C G A T C T A G T C A G

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.60
Offset:6
Orientation:reverse strand
Alignment:KATMWKCTKMCAAAGG
------VRRACAAWGG
 A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

PB0166.1_Sox12_2/Jaspar

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:KATMWKCTKMCAAAGG---
---AAACAGACAAAGGAAT
 A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T
A C G T A C G T A C G T T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

SOX10/MA0442.1/Jaspar

Match Rank:6
Score:0.59
Offset:9
Orientation:reverse strand
Alignment:KATMWKCTKMCAAAGG
---------ACAAAG-
 A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T

Sox3/MA0514.1/Jaspar

Match Rank:7
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:KATMWKCTKMCAAAGG
------AAAACAAAGG
 A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G
A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:8
Score:0.58
Offset:9
Orientation:reverse strand
Alignment:KATMWKCTKMCAAAGG-----
---------ACAAAGGNBCCT
 A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

PB0041.1_Mafb_1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-KATMWKCTKMCAAAGG
AAATTTGCTGACTTAGA
 A C G T A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G
G C T A C T G A C G T A G C A T C A G T G C A T C A T G G T A C G C A T C A T G C G T A A G T C C G A T G C A T C T G A C T A G G T A C

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:KATMWKCTKMCAAAGG
AACTAGCTGTCAATAC
 A C T G C T G A A C G T T G A C C G T A A C G T A G T C A C G T A C T G G T C A A G T C C G T A C G T A C G T A A C T G A C T G
G C T A C G T A A T G C A G C T C T G A A T C G G T A C A G C T C T A G C G A T A G T C C G T A G C T A C G A T T G C A T A G C