Information for 12-AGTCTGGACTGAG (Motif 15)

C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G
Reverse Opposite:
A G T C A G C T A G T C C G T A A C T G A C G T A G T C A G T C C G T A A C T G C G T A A G T C A C G T
p-value:1e-8
log p-value:-1.933e+01
Information Content per bp:1.924
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.2 +/- 24.8bp
Average Position of motif in Background46.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:forward strand
Alignment:AGTCTGGACTGAG
GGTCTGGCAT---
 C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G
A T C G C T A G G A C T A G T C A C G T A C T G A T C G G T A C C G T A C G A T A C G T A C G T A C G T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGGACTGAG
CTGTCTGG------
 A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----AGTCTGGACTGAG
NNTNNTGTCTGGNNTNG-
 A C G T A C G T A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGTCTGGACTGAG
VBSYGTCTGG------
 A C G T A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGGACTGAG
TWGTCTGV------
 A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AGTCTGGACTGAG
TGTCTAGACG---
 C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G
C G A T C A T G C A G T T A G C A C G T T C G A A T C G G C T A G A T C C T A G A C G T A C G T A C G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:AGTCTGGACTGAG
WDNCTGGGCA---
 C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G
G C A T C T A G G T A C A G T C C G A T A C T G C T A G C T A G G T A C G C T A A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:8
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-AGTCTGGACTGAG-
GGGGCTYGKCTGGGA
 A C G T C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G A C G T
C T A G C A T G C A T G T A C G A G T C G C A T A G C T C T A G A C G T A G T C G A C T A C T G A C T G A C T G T C G A

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:AGTCTGGACTGAG
---CTGACCTTTG
 C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G
A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.51
Offset:3
Orientation:forward strand
Alignment:AGTCTGGACTGAG--
---ATGCCCTGAGGC
 C G T A A C T G A C G T A G T C A C G T A C T G A C T G G T C A A G T C A C G T C T A G C T G A A C T G A C G T A C G T
A C G T A C G T A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C