Information for 3-RCACRTGWTTTCY (Motif 7)

C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
Reverse Opposite:
C T A G A C T G C G T A C G T A C G T A C G A T A G T C C G T A G A T C A C T G A C G T A C T G A G C T
p-value:1e-13
log p-value:-3.178e+01
Information Content per bp:1.875
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets41.8 +/- 12.3bp
Average Position of motif in Background32.0 +/- 22.6bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CLOCK/MA0819.1/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-RCACRTGWTTTCY
AACACGTGTT----
 A C G T C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
C T G A T C G A T G A C T C G A A G T C C T A G A G C T A C T G A G C T G A C T A C G T A C G T A C G T A C G T

MF0007.1_bHLH(zip)_class/Jaspar

Match Rank:2
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:RCACRTGWTTTCY
-CACGTGNT----
 C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
A C G T G A T C C G T A A T G C T A C G G A C T C T A G A T C G A G C T A C G T A C G T A C G T A C G T

Id2/MA0617.1/Jaspar

Match Rank:3
Score:0.70
Offset:0
Orientation:forward strand
Alignment:RCACRTGWTTTCY
GCACGTGA-----
 C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A A C G T A C G T A C G T A C G T A C G T

MAX/MA0058.3/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-RCACRTGWTTTCY
NNCACGTGGT----
 A C G T C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
C T G A T A C G T G A C C T G A A G T C T C A G G A C T A C T G A C T G A C G T A C G T A C G T A C G T A C G T

MLXIPL/MA0664.1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-RCACRTGWTTTCY
ATCACGTGAT----
 A C G T C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
C T G A C A G T A T G C C G T A T A G C T C A G A C G T A C T G G C T A G A C T A C G T A C G T A C G T A C G T

Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-RCACRTGWTTTCY
ACCACGTGGTNN--
 A C G T C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
T C G A T G A C A G T C C G T A A G T C C T A G A C G T A C T G A C T G A G C T A G T C G C A T A C G T A C G T

MNT/MA0825.1/Jaspar

Match Rank:7
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-RCACRTGWTTTCY
NGCACGTGNT----
 A C G T C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
C T A G A C T G G T A C G T C A A G T C T C A G C G A T C A T G A T C G G A C T A C G T A C G T A C G T A C G T

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-RCACRTGWTTTCY
NVCACGTG------
 A C G T C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T

TFEC/MA0871.1/Jaspar

Match Rank:9
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-RCACRTGWTTTCY
ATCACGTGAC----
 A C G T C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
T C G A C A G T G T A C C G T A A G T C T C A G G A C T A C T G T C G A A G T C A C G T A C G T A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-RCACRTGWTTTCY
GNCACGTG------
 A C G T C T G A A G T C C G T A A G T C C T A G A C G T A C T G C G T A A C G T A C G T A C G T A G T C A G T C
C T A G C A G T T G A C C G T A G A T C T C A G G A C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T