Information for 21-GAGATGCTTTGTC (Motif 35)

A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C C G T A C G T A C G T A A C T G A G T C C G T A A C G T A G T C A C G T A G T C
p-value:1e-5
log p-value:-1.236e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.7 +/- 25.8bp
Average Position of motif in Background45.0 +/- 27.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0166.1_Sox12_2/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:GAGATGCTTTGTC-----
--ANTCCTTTGTCTNNNN
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T C G T A G C A T A C G T A G T C A T G C C G A T A G C T C G A T T C A G A C G T T A G C G A C T T C A G G C A T A C G T A C G T

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.64
Offset:6
Orientation:forward strand
Alignment:GAGATGCTTTGTC
------CTTTGT-
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GAGATGCTTTGTC
AGGVNCCTTTGT-
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C
C G T A C T A G T C A G T C A G A G T C A T G C A G T C G C A T A G C T A C G T A T C G C G A T A C G T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.63
Offset:5
Orientation:forward strand
Alignment:GAGATGCTTTGTC--
-----CCWTTGTYYB
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C G C A T A G C T A C G T T C A G C G A T A G C T G A T C A T C G

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.61
Offset:5
Orientation:forward strand
Alignment:GAGATGCTTTGTC--
-----YCTTTGTTCC
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G A T A C G T A C G T A C T G A C G T A G C T A G T C A G T C

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.60
Offset:5
Orientation:forward strand
Alignment:GAGATGCTTTGTC--
-----CCTTTGTTTT
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G A T A C G T A C G T A T C G A C G T A G C T A G C T A G C T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:7
Score:0.59
Offset:5
Orientation:forward strand
Alignment:GAGATGCTTTGTC
-----CCWTTGTY
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A T G C G A T C C G A T A C G T A C G T A C T G C A G T A G C T

Sox6/MA0515.1/Jaspar

Match Rank:8
Score:0.58
Offset:5
Orientation:forward strand
Alignment:GAGATGCTTTGTC--
-----CCATTGTTTT
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A G T C A G T C C G T A A C G T A C G T A C T G A C G T A G C T G A C T A G C T

PB0071.1_Sox4_1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAGATGCTTTGTC-----
-TNNTCCTTTGTTCTNNT
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C A G T C C G A T A C G T C G A T T A C G C G A T A G C T G A T C G C A T G A C T T G A C C A G T

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GAGATGCTTTGTC-----
-NNNTCCTTTGTTCTNNN
 A C T G C G T A A C T G C G T A A C G T A C T G A G T C A C G T A C G T A C G T A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C G A T C G T A T C A G A G C T A G T C G A T C C G A T A C G T C G A T A C T G C G A T A G C T G A T C G C A T G C A T T G C A C G A T