Information for 19-KCCAGGAAGCCTGCCC (Motif 27)

A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
Reverse Opposite:
A C T G A C T G C T A G G T A C C T G A A C T G A T C G A G T C G A C T A C G T G T A C T A G C G C A T C T A G A C T G T G C A
p-value:1e-8
log p-value:-1.878e+01
Information Content per bp:1.735
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.37%
Number of Background Sequences with motif50.3
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets36.8 +/- 25.6bp
Average Position of motif in Background54.5 +/- 23.3bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.66
Offset:2
Orientation:forward strand
Alignment:KCCAGGAAGCCTGCCC
--CTGGCAGNCTGCCA
 A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
A C G T A C G T A G T C C G A T A C T G A T C G T G A C G C T A C A T G A T C G T G A C C G A T A C T G T A G C G T A C G T C A

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-KCCAGGAAGCCTGCCC
TTCCNGGAAG-------
 A C G T A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
G C A T C A G T T G A C A G T C T A G C T C A G C A T G G T C A C T G A T C A G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---KCCAGGAAGCCTGCCC
NCTTCCNGGAAGNN-----
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
T C A G A G T C G A C T A C G T G T A C A G T C C G A T C T A G C A T G G T C A C T G A T C A G A G C T T A C G A C G T A C G T A C G T A C G T A C G T

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--KCCAGGAAGCCTGCCC
TTTCCTGGAAAGNNN---
 A C G T A C G T A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
G A C T A G C T A G C T G A T C G A T C G C A T C T A G T C A G T C G A T C G A C T G A C T A G A G T C G C T A C T G A A C G T A C G T A C G T

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:5
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--KCCAGGAAGCCTGCCC
TTTCCNGGAAAN------
 A C G T A C G T A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
A G C T A C G T A C G T G T A C G A T C G C A T C T A G C A T G G T C A C G T A T C G A A G T C A C G T A C G T A C G T A C G T A C G T A C G T

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:KCCAGGAAGCCTGCCC
-ACAGGAAGTG-----
 A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
A C G T T C G A T A G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T T C A G A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:KCCAGGAAGCCTGCCC
----NGAAGC------
 A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:forward strand
Alignment:KCCAGGAAGCCTGCCC
AVCAGGAAGT------
 A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
C G T A T A G C T A G C T G C A A C T G C T A G C G T A C G T A T C A G G A C T A C G T A C G T A C G T A C G T A C G T A C G T

NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:KCCAGGAAGCCTGCCC-
-CTTGGCANNNTGCCAA
 A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C A C G T
A C G T A G T C G A C T C A G T A C T G C T A G T G A C G C T A A T G C G C A T A T C G C G A T A C T G G A T C G T A C G T C A C T G A

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---KCCAGGAAGCCTGCCC
ATTTCCNGGAAATN-----
 A C G T A C G T A C G T A C G T A G T C A G T C C G T A A T C G A C T G C G T A C T G A A C T G A T G C T A G C G A C T A C T G G A T C A G T C G T A C
C T G A G A C T A C G T A C G T G T A C G A T C G C T A C T A G C A T G C G T A C G T A C T G A G A C T T A C G A C G T A C G T A C G T A C G T A C G T