Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 818)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48177)	% of Background Sequences with Motif
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e-54	-1.255e+02	0.0000	111.0	13.57%	978.0	2.03%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e-50	-1.170e+02	0.0000	103.0	12.59%	899.4	1.86%
Gata6(Zf)/HUG1N-GATA6-ChIP-Seq(GSE51936)/Homer	YCTTATCTBN	1e-50	-1.156e+02	0.0000	124.0	15.16%	1384.7	2.87%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e-47	-1.091e+02	0.0000	128.0	15.65%	1576.6	3.27%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-42	-9.780e+01	0.0000	150.0	18.34%	2394.1	4.96%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-29	-6.790e+01	0.0000	97.0	11.86%	1433.6	2.97%
Sp5(Zf)/mES-Sp5.Flag-ChIP-Seq(GSE72989)/Homer	RGKGGGCGGAGC	1e-29	-6.771e+01	0.0000	171.0	20.90%	3918.6	8.12%
KLF3(Zf)/MEF-Klf3-ChIP-Seq(GSE44748)/Homer	NRGCCCCRCCCHBNN	1e-26	-6.069e+01	0.0000	99.0	12.10%	1640.9	3.40%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e-25	-5.794e+01	0.0000	35.0	4.28%	173.5	0.36%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e-23	-5.521e+01	0.0000	98.0	11.98%	1736.8	3.60%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e-23	-5.346e+01	0.0000	225.0	27.51%	6759.5	14.01%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-20	-4.722e+01	0.0000	171.0	20.90%	4736.6	9.82%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e-20	-4.647e+01	0.0000	76.0	9.29%	1260.7	2.61%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-18	-4.225e+01	0.0000	38.0	4.65%	344.2	0.71%
JunB(bZIP)/DendriticCells-Junb-ChIP-Seq(GSE36099)/Homer	RATGASTCAT	1e-17	-3.994e+01	0.0000	58.0	7.09%	871.1	1.81%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e-17	-3.972e+01	0.0000	63.0	7.70%	1020.3	2.11%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e-16	-3.730e+01	0.0000	66.0	8.07%	1167.3	2.42%
KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer	MKGGGYGTGGCC	1e-15	-3.669e+01	0.0000	140.0	17.11%	3946.2	8.18%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e-15	-3.624e+01	0.0000	55.0	6.72%	860.1	1.78%
Fra2(bZIP)/Striatum-Fra2-ChIP-Seq(GSE43429)/Homer	GGATGACTCATC	1e-15	-3.581e+01	0.0000	51.0	6.23%	755.7	1.57%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e-14	-3.395e+01	0.0000	58.0	7.09%	1000.9	2.07%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e-14	-3.283e+01	0.0000	41.0	5.01%	539.0	1.12%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-13	-3.040e+01	0.0000	30.0	3.67%	310.0	0.64%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e-12	-2.777e+01	0.0000	109.0	13.33%	3102.4	6.43%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e-11	-2.557e+01	0.0000	94.0	11.49%	2595.2	5.38%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e-9	-2.196e+01	0.0000	83.0	10.15%	2326.0	4.82%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e-9	-2.167e+01	0.0000	119.0	14.55%	3888.0	8.06%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e-8	-2.037e+01	0.0000	76.0	9.29%	2119.2	4.39%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-8	-2.036e+01	0.0000	151.0	18.46%	5462.6	11.32%
Ronin(THAP)/ES-Thap11-ChIP-Seq(GSE51522)/Homer	RACTACAACTCCCAGVAKGC	1e-8	-1.978e+01	0.0000	16.0	1.96%	135.0	0.28%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-8	-1.897e+01	0.0000	69.0	8.44%	1905.7	3.95%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e-8	-1.894e+01	0.0000	19.0	2.32%	207.6	0.43%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e-7	-1.787e+01	0.0000	105.0	12.84%	3516.9	7.29%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e-7	-1.744e+01	0.0000	67.0	8.19%	1900.9	3.94%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-7	-1.716e+01	0.0000	46.0	5.62%	1093.5	2.27%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e-7	-1.678e+01	0.0000	88.0	10.76%	2832.4	5.87%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e-7	-1.676e+01	0.0000	54.0	6.60%	1413.5	2.93%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-6	-1.556e+01	0.0000	46.0	5.62%	1157.1	2.40%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e-6	-1.555e+01	0.0000	16.0	1.96%	183.8	0.38%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-6	-1.525e+01	0.0000	74.0	9.05%	2318.8	4.81%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-6	-1.523e+01	0.0000	58.0	7.09%	1646.7	3.41%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e-6	-1.507e+01	0.0000	49.0	5.99%	1294.3	2.68%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-6	-1.490e+01	0.0000	10.0	1.22%	67.4	0.14%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e-6	-1.397e+01	0.0000	47.0	5.75%	1266.4	2.63%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-6	-1.382e+01	0.0000	63.0	7.70%	1933.7	4.01%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e-5	-1.349e+01	0.0000	43.0	5.26%	1131.6	2.35%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-5	-1.309e+01	0.0000	27.0	3.30%	559.0	1.16%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-5	-1.227e+01	0.0000	13.0	1.59%	158.9	0.33%
Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer	BSNTGTTTACWYWGN	1e-5	-1.216e+01	0.0000	20.0	2.44%	357.8	0.74%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-5	-1.160e+01	0.0001	32.0	3.91%	792.0	1.64%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e-5	-1.157e+01	0.0001	39.0	4.77%	1063.2	2.20%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-4	-1.150e+01	0.0001	25.0	3.06%	541.6	1.12%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e-4	-1.140e+01	0.0001	9.0	1.10%	79.0	0.16%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e-4	-1.112e+01	0.0001	67.0	8.19%	2288.9	4.74%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-4	-1.031e+01	0.0002	7.0	0.86%	51.3	0.11%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-4	-1.000e+01	0.0003	24.0	2.93%	557.1	1.15%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e-4	-9.735e+00	0.0004	36.0	4.40%	1034.5	2.14%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e-4	-9.659e+00	0.0004	36.0	4.40%	1038.5	2.15%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e-3	-9.063e+00	0.0007	40.0	4.89%	1239.3	2.57%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e-3	-8.954e+00	0.0008	47.0	5.75%	1550.1	3.21%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e-3	-8.803e+00	0.0009	87.0	10.64%	3437.4	7.13%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e-3	-8.636e+00	0.0010	7.0	0.86%	67.5	0.14%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e-3	-8.592e+00	0.0011	48.0	5.87%	1620.5	3.36%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e-3	-8.517e+00	0.0011	12.0	1.47%	199.9	0.41%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e-3	-8.417e+00	0.0012	20.0	2.44%	470.7	0.98%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-3	-8.371e+00	0.0013	24.0	2.93%	622.7	1.29%
ELF3(ETS)/PDAC-ELF3-ChIP-Seq(GSE64557)/Homer	ANCAGGAAGT	1e-3	-8.074e+00	0.0017	42.0	5.13%	1390.1	2.88%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e-3	-7.859e+00	0.0021	48.0	5.87%	1675.5	3.47%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e-3	-7.703e+00	0.0024	22.0	2.69%	574.7	1.19%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-3	-7.588e+00	0.0026	147.0	17.97%	6661.5	13.81%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-3	-7.500e+00	0.0028	38.0	4.65%	1253.6	2.60%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e-3	-7.374e+00	0.0032	35.0	4.28%	1130.6	2.34%
Zfp281(Zf)/ES-Zfp281-ChIP-Seq(GSE81042)/Homer	CCCCTCCCCCAC	1e-3	-7.238e+00	0.0036	22.0	2.69%	595.6	1.23%
NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer	NVCACGTG	1e-3	-6.994e+00	0.0045	77.0	9.41%	3144.5	6.52%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e-2	-6.795e+00	0.0054	16.0	1.96%	384.3	0.80%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-2	-6.727e+00	0.0057	17.0	2.08%	424.6	0.88%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-2	-6.707e+00	0.0058	38.0	4.65%	1310.6	2.72%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-2	-6.659e+00	0.0060	13.0	1.59%	281.5	0.58%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e-2	-6.280e+00	0.0086	33.0	4.03%	1117.8	2.32%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e-2	-6.269e+00	0.0086	29.0	3.55%	941.4	1.95%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e-2	-6.258e+00	0.0086	74.0	9.05%	3082.1	6.39%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e-2	-6.176e+00	0.0092	45.0	5.50%	1677.5	3.48%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-2	-6.159e+00	0.0093	40.0	4.89%	1445.6	3.00%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e-2	-6.157e+00	0.0093	39.0	4.77%	1399.5	2.90%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-2	-6.136e+00	0.0093	77.0	9.41%	3248.7	6.73%
TFE3(bHLH)/MEF-TFE3-ChIP-Seq(GSE75757)/Homer	GTCACGTGACYV	1e-2	-6.093e+00	0.0096	8.0	0.98%	133.2	0.28%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-6.036e+00	0.0100	79.0	9.66%	3362.7	6.97%
FOXK2(Forkhead)/U2OS-FOXK2-ChIP-Seq(E-MTAB-2204)/Homer	SCHTGTTTACAT	1e-2	-5.915e+00	0.0112	27.0	3.30%	877.1	1.82%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e-2	-5.910e+00	0.0112	3.0	0.37%	16.0	0.03%
THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer	TRAGGTCA	1e-2	-5.662e+00	0.0141	192.0	23.47%	9451.9	19.59%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e-2	-5.646e+00	0.0141	18.0	2.20%	512.1	1.06%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-5.618e+00	0.0144	17.0	2.08%	473.5	0.98%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e-2	-5.590e+00	0.0146	37.0	4.52%	1354.7	2.81%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e-2	-5.586e+00	0.0146	43.0	5.26%	1637.6	3.39%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-2	-5.580e+00	0.0146	28.0	3.42%	944.4	1.96%
FOXK1(Forkhead)/HEK293-FOXK1-ChIP-Seq(GSE51673)/Homer	NVWTGTTTAC	1e-2	-5.552e+00	0.0147	38.0	4.65%	1404.8	2.91%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e-2	-5.516e+00	0.0151	10.0	1.22%	213.5	0.44%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e-2	-5.507e+00	0.0151	13.0	1.59%	322.9	0.67%
Foxo3(Forkhead)/U2OS-Foxo3-ChIP-Seq(E-MTAB-2701)/Homer	DGTAAACA	1e-2	-5.482e+00	0.0153	28.0	3.42%	951.8	1.97%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e-2	-5.427e+00	0.0160	24.0	2.93%	778.4	1.61%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e-2	-5.372e+00	0.0167	21.0	2.57%	652.6	1.35%
Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer	WWATRTAAACAN	1e-2	-5.242e+00	0.0189	29.0	3.55%	1014.9	2.10%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e-2	-5.025e+00	0.0232	16.0	1.96%	462.1	0.96%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-2	-5.007e+00	0.0234	23.0	2.81%	762.2	1.58%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-2	-5.005e+00	0.0234	8.0	0.98%	160.9	0.33%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-2	-4.847e+00	0.0270	19.0	2.32%	598.5	1.24%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e-2	-4.842e+00	0.0270	38.0	4.65%	1470.2	3.05%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e-2	-4.702e+00	0.0306	33.0	4.03%	1245.8	2.58%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e-2	-4.666e+00	0.0314	10.0	1.22%	242.7	0.50%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-4.522e+00	0.0360	13.0	1.59%	365.8	0.76%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e-1	-4.470e+00	0.0375	15.0	1.83%	450.1	0.93%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e-1	-4.408e+00	0.0396	30.0	3.67%	1130.4	2.34%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e-1	-4.334e+00	0.0422	78.0	9.54%	3559.1	7.38%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e-1	-4.325e+00	0.0422	72.0	8.80%	3247.4	6.73%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-4.261e+00	0.0446	8.0	0.98%	183.7	0.38%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-1	-4.236e+00	0.0454	10.0	1.22%	259.1	0.54%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e-1	-4.167e+00	0.0482	34.0	4.16%	1345.1	2.79%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-4.040e+00	0.0543	28.0	3.42%	1069.1	2.22%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e-1	-4.033e+00	0.0543	43.0	5.26%	1804.3	3.74%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e-1	-3.948e+00	0.0585	16.0	1.96%	524.6	1.09%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e-1	-3.947e+00	0.0585	88.0	10.76%	4156.5	8.62%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-3.743e+00	0.0707	8.0	0.98%	202.4	0.42%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-1	-3.718e+00	0.0719	236.0	28.85%	12421.2	25.75%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e-1	-3.681e+00	0.0740	32.0	3.91%	1299.1	2.69%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e-1	-3.567e+00	0.0823	15.0	1.83%	505.7	1.05%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-3.475e+00	0.0895	8.0	0.98%	213.2	0.44%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e-1	-3.442e+00	0.0917	26.0	3.18%	1031.7	2.14%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e-1	-3.427e+00	0.0924	46.0	5.62%	2037.9	4.22%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-3.402e+00	0.0940	29.0	3.55%	1182.3	2.45%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.261e+00	0.1074	60.0	7.33%	2794.0	5.79%
MafB(bZIP)/BMM-Mafb-ChIP-Seq(GSE75722)/Homer	WNTGCTGASTCAGCANWTTY	1e-1	-3.215e+00	0.1116	15.0	1.83%	530.6	1.10%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-3.166e+00	0.1163	48.0	5.87%	2180.1	4.52%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-3.146e+00	0.1177	89.0	10.88%	4373.9	9.07%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e-1	-3.033e+00	0.1308	13.0	1.59%	452.1	0.94%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e-1	-2.978e+00	0.1372	36.0	4.40%	1587.7	3.29%
HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer	RTTATGYAAB	1e-1	-2.900e+00	0.1473	26.0	3.18%	1090.6	2.26%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e-1	-2.886e+00	0.1483	32.0	3.91%	1395.5	2.89%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e-1	-2.884e+00	0.1483	172.0	21.03%	9058.3	18.78%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e-1	-2.880e+00	0.1483	6.0	0.73%	159.9	0.33%
E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer	BTKGGCGGGAAA	1e-1	-2.868e+00	0.1483	53.0	6.48%	2493.3	5.17%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e-1	-2.859e+00	0.1483	18.0	2.20%	701.6	1.45%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-2.816e+00	0.1534	18.0	2.20%	705.2	1.46%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e-1	-2.810e+00	0.1534	9.0	1.10%	288.0	0.60%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e-1	-2.808e+00	0.1534	54.0	6.60%	2557.1	5.30%
NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer	ACCATCTGTT	1e-1	-2.671e+00	0.1736	68.0	8.31%	3337.1	6.92%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e-1	-2.645e+00	0.1770	4.0	0.49%	91.7	0.19%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e-1	-2.642e+00	0.1770	35.0	4.28%	1584.5	3.28%
IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer	AGTTTCAKTTTC	1e-1	-2.628e+00	0.1776	12.0	1.47%	436.2	0.90%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e-1	-2.607e+00	0.1802	6.0	0.73%	171.7	0.36%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e-1	-2.591e+00	0.1818	50.0	6.11%	2384.1	4.94%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e-1	-2.523e+00	0.1933	31.0	3.79%	1394.5	2.89%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e-1	-2.490e+00	0.1985	167.0	20.42%	8907.7	18.46%
CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer	NGYCATAAAWCH	1e-1	-2.445e+00	0.2063	26.0	3.18%	1147.6	2.38%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e-1	-2.442e+00	0.2063	42.0	5.13%	1985.7	4.12%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-1	-2.434e+00	0.2063	2.0	0.24%	29.3	0.06%
Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer	GWAAYHTGAKMC	1e-1	-2.311e+00	0.2314	33.0	4.03%	1532.0	3.18%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-1	-2.311e+00	0.2314	20.0	2.44%	858.4	1.78%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-2.302e+00	0.2314	43.0	5.26%	2064.6	4.28%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.293e+00	0.2314	45.0	5.50%	2173.8	4.51%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-2.254e+00	0.2388	53.0	6.48%	2613.0	5.42%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.253e+00	0.2388	12.0	1.47%	467.6	0.97%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.249e+00	0.2388	16.0	1.96%	664.6	1.38%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.224e+00	0.2416	22.0	2.69%	971.0	2.01%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-2.170e+00	0.2534	128.0	15.65%	6809.2	14.11%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-2.107e+00	0.2683	6.0	0.73%	197.5	0.41%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-2.033e+00	0.2871	17.0	2.08%	740.0	1.53%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.012e+00	0.2915	54.0	6.60%	2722.0	5.64%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.999e+00	0.2935	19.0	2.32%	846.5	1.75%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.983e+00	0.2965	16.0	1.96%	694.9	1.44%
Pitx1:Ebox(Homeobox,bHLH)/Hindlimb-Pitx1-ChIP-Seq(GSE41591)/Homer	YTAATTRAWWCCAGATGT	1e0	-1.975e+00	0.2972	6.0	0.73%	205.1	0.43%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.969e+00	0.2972	19.0	2.32%	850.5	1.76%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.957e+00	0.2989	53.0	6.48%	2680.2	5.56%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.912e+00	0.3109	94.0	11.49%	4978.0	10.32%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-1.908e+00	0.3109	12.0	1.47%	500.1	1.04%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.895e+00	0.3126	18.0	2.20%	808.9	1.68%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.872e+00	0.3182	58.0	7.09%	2977.7	6.17%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.858e+00	0.3208	1.0	0.12%	10.1	0.02%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	-1.845e+00	0.3230	33.0	4.03%	1613.1	3.34%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.815e+00	0.3311	29.0	3.55%	1403.1	2.91%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.726e+00	0.3599	4.0	0.49%	129.7	0.27%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.686e+00	0.3725	35.0	4.28%	1754.3	3.64%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.644e+00	0.3865	5.0	0.61%	180.7	0.37%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.621e+00	0.3931	3.0	0.37%	90.3	0.19%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.600e+00	0.3994	3.0	0.37%	91.8	0.19%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-1.568e+00	0.4102	2.0	0.24%	50.1	0.10%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-1.559e+00	0.4116	27.0	3.30%	1343.8	2.79%
IRF8(IRF)/BMDM-IRF8-ChIP-Seq(GSE77884)/Homer	GRAASTGAAAST	1e0	-1.546e+00	0.4148	12.0	1.47%	541.1	1.12%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.514e+00	0.4259	5.0	0.61%	189.8	0.39%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.514e+00	0.4259	6.0	0.73%	239.0	0.50%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.512e+00	0.4259	11.0	1.34%	493.8	1.02%
Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer	GGCCYCCTGCTGDGH	1e0	-1.493e+00	0.4281	37.0	4.52%	1908.7	3.96%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.454e+00	0.4428	129.0	15.77%	7146.7	14.81%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	-1.439e+00	0.4471	3.0	0.37%	99.6	0.21%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-1.431e+00	0.4486	6.0	0.73%	245.6	0.51%
SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer	CAAGGHCANV	1e0	-1.427e+00	0.4486	18.0	2.20%	878.8	1.82%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-1.406e+00	0.4553	7.0	0.86%	298.9	0.62%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.385e+00	0.4627	27.0	3.30%	1379.2	2.86%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.366e+00	0.4688	3.0	0.37%	103.6	0.21%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-1.363e+00	0.4688	127.0	15.53%	7073.5	14.66%
COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer	AGRGGTCA	1e0	-1.359e+00	0.4688	68.0	8.31%	3693.1	7.66%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.357e+00	0.4688	9.0	1.10%	407.6	0.84%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.350e+00	0.4688	71.0	8.68%	3867.9	8.02%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-1.322e+00	0.4781	5.0	0.61%	204.8	0.42%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.317e+00	0.4783	7.0	0.86%	307.0	0.64%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.315e+00	0.4783	28.0	3.42%	1450.8	3.01%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.311e+00	0.4783	20.0	2.44%	1008.8	2.09%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-1.299e+00	0.4783	6.0	0.73%	257.7	0.53%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.299e+00	0.4783	6.0	0.73%	257.9	0.53%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.285e+00	0.4818	56.0	6.85%	3036.6	6.29%
Tbr1(T-box)/Cortex-Tbr1-ChIP-Seq(GSE71384)/Homer	AAGGTGTKAA	1e0	-1.255e+00	0.4940	46.0	5.62%	2478.1	5.14%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.204e+00	0.5174	4.0	0.49%	163.9	0.34%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.194e+00	0.5202	71.0	8.68%	3926.3	8.14%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-1.174e+00	0.5285	114.0	13.94%	6414.7	13.30%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.172e+00	0.5285	20.0	2.44%	1036.8	2.15%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.168e+00	0.5285	10.0	1.22%	485.3	1.01%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.165e+00	0.5285	5.0	0.61%	218.8	0.45%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.149e+00	0.5318	47.0	5.75%	2569.7	5.33%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.141e+00	0.5333	15.0	1.83%	764.5	1.58%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.116e+00	0.5446	20.0	2.44%	1048.5	2.17%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.109e+00	0.5458	70.0	8.56%	3903.2	8.09%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-1.090e+00	0.5537	30.0	3.67%	1619.4	3.36%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-1.086e+00	0.5537	75.0	9.17%	4201.6	8.71%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-1.084e+00	0.5537	5.0	0.61%	227.0	0.47%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.064e+00	0.5605	2.0	0.24%	72.1	0.15%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.063e+00	0.5605	1.0	0.12%	25.1	0.05%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-1.047e+00	0.5654	2.0	0.24%	73.6	0.15%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.046e+00	0.5654	46.0	5.62%	2547.5	5.28%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.037e+00	0.5658	12.0	1.47%	616.6	1.28%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.032e+00	0.5664	23.0	2.81%	1237.9	2.57%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-1.031e+00	0.5664	1.0	0.12%	26.4	0.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-9.931e-01	0.5837	17.0	2.08%	906.5	1.88%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-9.755e-01	0.5915	11.0	1.34%	571.8	1.19%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-9.740e-01	0.5915	65.0	7.95%	3672.5	7.61%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.727e-01	0.5915	1.0	0.12%	28.6	0.06%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-9.620e-01	0.5919	34.0	4.16%	1886.8	3.91%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-9.451e-01	0.5994	7.0	0.86%	352.5	0.73%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-9.366e-01	0.6020	26.0	3.18%	1434.7	2.97%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-8.933e-01	0.6260	81.0	9.90%	4641.9	9.62%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-8.885e-01	0.6264	5.0	0.61%	248.0	0.51%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	-8.830e-01	0.6272	20.0	2.44%	1104.0	2.29%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-8.692e-01	0.6333	15.0	1.83%	820.3	1.70%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-8.671e-01	0.6333	6.0	0.73%	307.1	0.64%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-8.627e-01	0.6333	16.0	1.96%	879.1	1.82%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-8.520e-01	0.6363	15.0	1.83%	824.2	1.71%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	-8.501e-01	0.6363	74.0	9.05%	4255.1	8.82%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-8.348e-01	0.6422	2.0	0.24%	87.9	0.18%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-8.272e-01	0.6444	37.0	4.52%	2107.1	4.37%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.217e-01	0.6454	68.0	8.31%	3919.6	8.12%
Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer	AAACMATTAN	1e0	-8.044e-01	0.6539	11.0	1.34%	604.2	1.25%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-7.633e-01	0.6787	1.0	0.12%	37.8	0.08%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.544e-01	0.6793	6.0	0.73%	324.9	0.67%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.544e-01	0.6793	6.0	0.73%	324.3	0.67%
DUX4(Homeobox)/Myoblasts-DUX4.V5-ChIP-Seq(GSE75791)/Homer	NWTAAYCYAATCAWN	1e0	-7.442e-01	0.6836	1.0	0.12%	38.1	0.08%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-7.286e-01	0.6916	67.0	8.19%	3910.3	8.11%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-7.070e-01	0.7039	3.0	0.37%	156.7	0.32%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.037e-01	0.7039	4.0	0.49%	215.7	0.45%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-6.949e-01	0.7069	69.0	8.44%	4047.7	8.39%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-6.833e-01	0.7124	6.0	0.73%	336.4	0.70%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-6.823e-01	0.7124	4.0	0.49%	218.8	0.45%
Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-6.791e-01	0.7124	8.0	0.98%	455.4	0.94%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-6.772e-01	0.7124	13.0	1.59%	751.6	1.56%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-6.732e-01	0.7124	76.0	9.29%	4473.7	9.27%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-6.462e-01	0.7253	17.0	2.08%	997.8	2.07%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-6.419e-01	0.7256	3.0	0.37%	164.9	0.34%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.403e-01	0.7256	15.0	1.83%	880.4	1.82%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.286e-01	0.7299	24.0	2.93%	1419.9	2.94%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-6.221e-01	0.7319	91.0	11.12%	5394.9	11.18%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-6.201e-01	0.7319	12.0	1.47%	707.9	1.47%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.201e-01	0.7319	18.0	2.20%	1065.5	2.21%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-6.172e-01	0.7319	11.0	1.34%	649.0	1.35%
Cux2(Homeobox)/Liver-Cux2-ChIP-Seq(GSE35985)/Homer	HNRAATCAAT	1e0	-6.139e-01	0.7319	10.0	1.22%	589.1	1.22%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.131e-01	0.7319	2.0	0.24%	107.8	0.22%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-6.131e-01	0.7319	2.0	0.24%	107.8	0.22%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-5.991e-01	0.7319	43.0	5.26%	2562.1	5.31%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.913e-01	0.7328	11.0	1.34%	655.4	1.36%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-5.843e-01	0.7353	21.0	2.57%	1258.0	2.61%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.833e-01	0.7353	6.0	0.73%	355.8	0.74%
Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer	CCATTGTTYB	1e0	-5.684e-01	0.7416	18.0	2.20%	1083.5	2.25%
Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer	NTAATBNAATTA	1e0	-5.444e-01	0.7569	12.0	1.47%	729.3	1.51%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-5.437e-01	0.7569	2.0	0.24%	115.2	0.24%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.422e-01	0.7569	71.0	8.68%	4264.5	8.84%
Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer	TGTTKCCTAGCAACM	1e0	-5.391e-01	0.7569	42.0	5.13%	2535.3	5.26%
OCT:OCT(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	YATGCATATRCATRT	1e0	-5.342e-01	0.7569	1.0	0.12%	53.0	0.11%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-5.277e-01	0.7569	2.0	0.24%	117.7	0.24%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.224e-01	0.7575	1.0	0.12%	53.3	0.11%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-5.123e-01	0.7625	88.0	10.76%	5300.8	10.99%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-4.883e-01	0.7783	29.0	3.55%	1781.3	3.69%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.823e-01	0.7803	7.0	0.86%	440.4	0.91%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-4.805e-01	0.7803	6.0	0.73%	378.6	0.78%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-4.681e-01	0.7833	1.0	0.12%	58.8	0.12%
p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer	NRRRCAWGTCCDGRCATGYY	1e0	-4.681e-01	0.7833	1.0	0.12%	58.2	0.12%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-4.356e-01	0.8064	56.0	6.85%	3444.2	7.14%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-4.344e-01	0.8064	11.0	1.34%	704.3	1.46%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-4.154e-01	0.8172	14.0	1.71%	898.4	1.86%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-4.042e-01	0.8237	15.0	1.83%	965.5	2.00%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-3.933e-01	0.8299	2.0	0.24%	137.7	0.29%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	-3.919e-01	0.8299	5.0	0.61%	337.8	0.70%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.882e-01	0.8299	122.0	14.91%	7453.2	15.45%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-3.714e-01	0.8397	66.0	8.07%	4102.4	8.50%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-3.442e-01	0.8600	3.0	0.37%	216.5	0.45%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-3.360e-01	0.8642	3.0	0.37%	218.9	0.45%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-3.327e-01	0.8642	74.0	9.05%	4625.3	9.59%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-3.310e-01	0.8642	27.0	3.30%	1751.2	3.63%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-3.235e-01	0.8664	15.0	1.83%	1004.7	2.08%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.173e-01	0.8689	6.0	0.73%	426.1	0.88%
Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer	VCAKCTGGNNNCCAGMTGBN	1e0	-3.165e-01	0.8689	3.0	0.37%	223.5	0.46%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-3.127e-01	0.8689	3.0	0.37%	224.2	0.46%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.115e-01	0.8689	8.0	0.98%	560.3	1.16%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.092e-01	0.8689	5.0	0.61%	362.1	0.75%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.021e-01	0.8689	53.0	6.48%	3377.7	7.00%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.924e-01	0.8737	7.0	0.86%	502.1	1.04%
Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer	TGACANARRCCAGRC	1e0	-2.880e-01	0.8747	12.0	1.47%	831.6	1.72%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.852e-01	0.8747	7.0	0.86%	505.5	1.05%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-2.669e-01	0.8877	144.0	17.60%	8941.6	18.53%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-2.537e-01	0.8966	7.0	0.86%	519.5	1.08%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.529e-01	0.8966	40.0	4.89%	2624.3	5.44%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.515e-01	0.8966	46.0	5.62%	2998.6	6.22%
OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer	ATGCATWATGCATRW	1e0	-2.397e-01	0.9007	11.0	1.34%	793.0	1.64%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	-2.348e-01	0.9023	4.0	0.49%	320.1	0.66%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-2.207e-01	0.9122	13.0	1.59%	937.7	1.94%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.182e-01	0.9122	1.0	0.12%	96.9	0.20%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-2.177e-01	0.9122	22.0	2.69%	1523.1	3.16%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.017e-01	0.9211	5.0	0.61%	406.8	0.84%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.786e-01	0.9397	96.0	11.74%	6185.6	12.82%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.750e-01	0.9402	3.0	0.37%	272.4	0.56%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.662e-01	0.9456	59.0	7.21%	3921.7	8.13%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.625e-01	0.9462	4.0	0.49%	354.4	0.73%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-1.463e-01	0.9588	2.0	0.24%	206.0	0.43%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.423e-01	0.9597	1.0	0.12%	119.4	0.25%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.332e-01	0.9654	39.0	4.77%	2715.2	5.63%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.322e-01	0.9654	65.0	7.95%	4361.0	9.04%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.242e-01	0.9684	3.0	0.37%	300.7	0.62%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.169e-01	0.9725	14.0	1.71%	1099.4	2.28%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-1.069e-01	0.9794	2.0	0.24%	228.1	0.47%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-9.757e-02	0.9856	8.0	0.98%	701.7	1.45%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.028e-02	1.0000	10.0	1.22%	885.1	1.83%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-6.941e-02	1.0000	6.0	0.73%	588.1	1.22%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-6.148e-02	1.0000	1.0	0.12%	166.8	0.35%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-6.135e-02	1.0000	8.0	0.98%	753.8	1.56%
HNF1b(Homeobox)/PDAC-HNF1B-ChIP-Seq(GSE64557)/Homer	GTTAATNATTAA	1e0	-5.936e-02	1.0000	1.0	0.12%	168.7	0.35%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.187e-02	1.0000	4.0	0.49%	455.0	0.94%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-5.142e-02	1.0000	48.0	5.87%	3506.5	7.27%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.714e-02	1.0000	20.0	2.44%	1648.7	3.42%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-3.906e-02	1.0000	1.0	0.12%	192.6	0.40%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.389e-02	1.0000	4.0	0.49%	491.5	1.02%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.013e-02	1.0000	12.0	1.47%	1134.6	2.35%
LRF(Zf)/Erythroblasts-ZBTB7A-ChIP-Seq(GSE74977)/Homer	AAGACCCYYN	1e0	-2.271e-02	1.0000	80.0	9.78%	5762.4	11.94%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	-2.058e-02	1.0000	18.0	2.20%	1623.5	3.37%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.461e-02	1.0000	1.0	0.12%	249.4	0.52%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.460e-02	1.0000	8.0	0.98%	902.5	1.87%
Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer	SNGCACCTGCHS	1e0	-9.027e-03	1.0000	13.0	1.59%	1349.5	2.80%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.000e-06	1.0000	30.0	3.67%	3655.3	7.58%
ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer	VCAGGTRDRY	1e0	-0.000e+00	1.0000	31.0	3.79%	4227.7	8.76%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	0.000e+00	1.0000	0.0	0.00%	47.4	0.10%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	0.000e+00	1.0000	0.0	0.00%	103.6	0.21%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	0.000e+00	1.0000	0.0	0.00%	26.8	0.06%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	0.000e+00	1.0000	0.0	0.00%	90.3	0.19%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	0.000e+00	1.0000	0.0	0.00%	153.0	0.32%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	0.000e+00	1.0000	0.0	0.00%	12.7	0.03%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	0.000e+00	1.0000	0.0	0.00%	10.8	0.02%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	0.000e+00	1.0000	0.0	0.00%	12.2	0.03%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	0.0	0.00%	9.3	0.02%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	0.000e+00	1.0000	0.0	0.00%	3.1	0.01%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	0.000e+00	1.0000	0.0	0.00%	18.7	0.04%