Information for 13-GAGGTCATGACCT (Motif 17)

A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T
Reverse Opposite:
C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T A G T C
p-value:1e-3
log p-value:-7.485e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.24%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets57.5 +/- 18.0bp
Average Position of motif in Background57.9 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCATGACCT
AGRGGTCA------
 A C G T A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:2
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-GAGGTCATGACCT
TRAGGTCA------
 A C G T A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:3
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GAGGTCATGACCT
NTNNNGGGGTCANGNNN-
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGGTCATGACCT
-AGGTCA------
 A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:GAGGTCATGACCT----
-------TGACCTTGAT
 A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GAGGTCATGACCT
GGCGAGGGGTCAAGGGC-
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:GAGGTCATGACCT---
------ATGACCTTGA
 A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G A C T T C A G G T C A T A G C G T A C A G C T G A C T A T C G C T G A

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:8
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAGGTCATGACCT
---GTCATN----
 A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T
A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GAGGTCATGACCT------
---NNNNTGACCTTTNNNN
 A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C G A T A T G C C A T G A G C T T C A G G T C A G T A C G T A C A G C T A G C T G C A T C A T G T C G A C A T G G T C A

NR2F1/MA0017.2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGGTCATGACCT
CAAAGGTCAAGGG--
 A C G T A C G T A C T G C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C T G C G T A A G T C A G T C A C G T
G T A C G C T A C T G A C T G A A T C G A C T G A C G T A G T C C T G A G T C A T C A G T C A G C T A G A C G T A C G T