Information for 20-GGCAAGATTA (Motif 34)

A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A
Reverse Opposite:
A C G T T C G A T G C A A C G T A G T C A C G T A G C T C A T G T A G C T A G C
p-value:1e-1
log p-value:-3.993e+00
Information Content per bp:1.649
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.0 +/- 0.0bp
Average Position of motif in Background82.0 +/- 6.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGATTA
AAGGCAAGTGT-
 A C G T A C G T A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----GGCAAGATTA
TNNGGGCAG-----
 A C G T A C G T A C G T A C G T A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

PB0185.1_Tcf1_2/Jaspar

Match Rank:3
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGATTA--
TTGCCCGGATTAGG
 A C G T A C G T A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A A C G T A C G T
C G A T A C G T T C A G G A T C T A G C A G T C T A C G A C T G C T G A C A G T A C G T C G T A C A T G C T A G

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GGCAAGATTA
NTTGGCANN----
 A C G T A C G T A C G T A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A
A T G C G A C T A C G T A C T G T A C G T G A C C G T A G T A C A T C G A C G T A C G T A C G T A C G T

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GGCAAGATTA-
---RGGATTAR
 A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A A C G T
A C G T A C G T A C G T T C A G C T A G C T A G T G C A C G A T C G A T C G T A C T A G

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GGCAAGATTA
NGTGGGCAT-----
 A C G T A C G T A C G T A C G T A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A
T C A G A T C G A G C T A C T G C A T G A C T G A G T C C T G A A G C T A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GGCAAGATTA
TTGCCAAG----
 A C G T A C G T A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T

POL006.1_BREu/Jaspar

Match Rank:8
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GGCAAGATTA
GGCGCGCT--
 A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A
C T A G T A C G A G T C A C T G A G T C A T C G A T G C A C G T A C G T A C G T

Nr2e3/MA0164.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GGCAAGATTA
--CAAGCTT-
 A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A
A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T

OTX2/MA0712.1/Jaspar

Match Rank:10
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGCAAGATTA-
---NGGATTAA
 A T C G A T C G G A T C T C G A T G C A T C A G T G C A A C G T A G C T G T C A A C G T
A C G T A C G T A C G T T G C A T C A G C T A G G T C A A C G T G C A T C G T A C T G A