Information for 8-CCTGTTGTTCCGC (Motif 15)

A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C
Reverse Opposite:
A C T G A G T C C T A G A C T G C G T A C G T A A G T C G T C A C G T A T G A C G T C A A C T G A C T G
p-value:1e-12
log p-value:-2.880e+01
Information Content per bp:1.914
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif3.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.2 +/- 29.2bp
Average Position of motif in Background53.2 +/- 5.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCTGTTGTTCCGC
NCCATTGTTC---
 A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C
A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T A C G T

PB0173.1_Sox21_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCTGTTGTTCCGC--
AATCAATTGTTCCGCTA
 A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T
T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

SCRT1/MA0743.1/Jaspar

Match Rank:3
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CCTGTTGTTCCGC
ANCCACCTGTTGCNC---
 A C G T A C G T A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C
C T G A T C G A T G A C G T A C T C G A G T A C G A T C A C G T A C T G A C G T C A G T C T A G T G A C C G A T A G T C A C G T A C G T A C G T

PB0183.1_Sry_2/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CCTGTTGTTCCGC--
CNNNTATTGTTCNNNNN
 A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C A C G T A C G T
A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CCTGTTGTTCCGC
-CCATTGTTNY--
 A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C
A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T A C G T A C G T

SCRT2/MA0744.1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCTGTTGTTCCGC
CCACCTGTTGCAT---
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C
T A G C G T A C C G T A A T G C A G T C A C G T C A T G A C G T A C G T A C T G T G A C C G T A A G C T A C G T A C G T A C G T

SPIB/MA0081.1/Jaspar

Match Rank:7
Score:0.59
Offset:7
Orientation:reverse strand
Alignment:CCTGTTGTTCCGC-
-------TTCCTCT
 A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C G A T C G A T G A T C A G T C A C G T A T G C C G A T

SOX9/MA0077.1/Jaspar

Match Rank:8
Score:0.59
Offset:1
Orientation:forward strand
Alignment:CCTGTTGTTCCGC
-CCATTGTTC---
 A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C
A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:9
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---CCTGTTGTTCCGC-
ANNTCTATTGTTCNNNA
 A C G T A C G T A C G T A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C A C G T
C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CCTGTTGTTCCGC
GCTGTGGTTT---
 A G T C A G T C A C G T A C T G A C G T A C G T A C T G A C G T A C G T A G T C A G T C A C T G A G T C
A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T A C G T A C G T A C G T