Information for 18-CTCCAWCATG (Motif 27)

G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G
Reverse Opposite:
G T A C T C G A A C G T C T A G G C A T G C A T C T A G A C T G T C G A C A T G
p-value:1e-7
log p-value:-1.716e+01
Information Content per bp:1.483
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif256.5
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets62.4 +/- 26.5bp
Average Position of motif in Background49.7 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0086.1_Irx5/Jaspar

Match Rank:1
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTCCAWCATG------
ANTNNTACATGTANNTN
 A C G T G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T
G C T A G T C A G C A T G C A T C A G T C G A T G C T A A G T C C G T A G C A T T C A G C G A T G C T A C G A T G C T A G C A T G C A T

Pax2/MA0067.1/Jaspar

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:CTCCAWCATG-
---AGTCACGC
 G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G A C G T
A C G T A C G T A C G T G C T A C T A G G C A T A G T C C T G A G A T C C A T G A T C G

PH0082.1_Irx2/Jaspar

Match Rank:3
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CTCCAWCATG------
ANTNTTACATGTATNTA
 A C G T G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T
C G T A T G C A G C A T G A C T G A C T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A G A C T G C A T C G A T G C T A

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCCAWCATG------
NNTATTACATGTANNNT
 A C G T G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T C T G A G C A T G C T A A C G T C G A T C G T A G A T C C G T A G C A T C T A G C G A T G C T A C G A T G C T A G C A T G C A T

PH0085.1_Irx4/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCCAWCATG------
NNTTTTACATGTANNNT
 A C G T G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T
G C A T T A C G G C A T G C A T C A G T C G A T C G T A A G T C C G T A G C A T C T A G G C A T G C T A G A C T C G T A G C A T G C A T

PH0083.1_Irx3_1/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCCAWCATG------
ANTATTACATGTANNNN
 A C G T G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C T A G G C A T G C T A A C G T C G A T C G T A A G T C C G T A G C A T T A C G C G A T G C T A A G C T G C A T G A C T G C A T

PH0087.1_Irx6/Jaspar

Match Rank:7
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCCAWCATG------
ANTTNTACATGTANTTN
 A C G T G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G A C G T A C G T A C G T A C G T A C G T A C G T
G C T A C G A T C G A T G C A T A C G T C G A T C G T A A G T C C G T A G C A T C T A G C G A T G C T A G A C T C G A T C G A T C G A T

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---CTCCAWCATG
GYCATCMATCAT-
 A C G T A C G T A C G T G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:9
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:CTCCAWCATG
----GTCATN
 G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G
A C G T A C G T A C G T A C G T T C A G A C G T G A T C C G T A A G C T A T C G

Mitf/MA0620.1/Jaspar

Match Rank:10
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CTCCAWCATG---
---GGTCACGTGG
 G T A C A G C T T G A C G A T C C G T A C G T A A G T C G T C A A G C T C A T G A C G T A C G T A C G T
A C G T A C G T A C G T C T A G T C A G A C G T T G A C G T C A A G T C T C A G G C A T A C T G T C A G