Information for 2-YGCCMCCTGSTGGHSR (Motif 2)

A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
Reverse Opposite:
A G C T A T C G C T A G T G A C A G T C C G T A T A G C A G T C C G T A A C T G T C A G C A T G A T C G A T C G G A T C T C A G
p-value:1e-50
log p-value:-1.172e+02
Information Content per bp:1.613
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif8.70%
Number of Background Sequences with motif320.5
Percentage of Background Sequences with motif0.69%
Average Position of motif in Targets49.4 +/- 25.5bp
Average Position of motif in Background52.0 +/- 26.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.95
Offset:-3
Orientation:reverse strand
Alignment:---YGCCMCCTGSTGGHSR
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.93
Offset:-6
Orientation:forward strand
Alignment:------YGCCMCCTGSTGGHSR
CNNBRGCGCCCCCTGSTGGC--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C A C G T A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.92
Offset:-4
Orientation:forward strand
Alignment:----YGCCMCCTGSTGGHSR
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.67
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGSTGGHSR
GGCCYCCTGCTGDGH-
 A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C A C G T

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:YGCCMCCTGSTGGHSR
-GCCATCTGTT-----
 A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
A C G T T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T A C G T A C G T A C G T A C G T A C G T

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:YGCCMCCTGSTGGHSR
--CCCCCTGCTGTG--
 A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G A C G T A C G T

PB0076.1_Sp4_1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----YGCCMCCTGSTGGHSR
GGTCCCGCCCCCTTCTC----
 A C G T A C G T A C G T A C G T A C G T A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
A C T G C A T G G A C T G T A C G T A C A G T C C T A G A G T C A T G C A G T C G T A C A G T C G A C T G A C T T A G C A G C T A G T C A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGSTGGHSR
GACCCCCCGCTGTGC-
 A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:9
Score:0.61
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGSTGGHSR
SNGCACCTGCHS----
 A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
T A C G C T A G T A C G A G T C C G T A A G T C A G T C A C G T A C T G A G T C G A T C T A G C A C G T A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.61
Offset:0
Orientation:forward strand
Alignment:YGCCMCCTGSTGGHSR
GACCCCCCGCTGTG--
 A G T C C T A G T A G C A T G C G T A C A G T C G T A C G C A T C T A G A T C G G C A T C T A G A C T G G A T C T A G C T C G A
A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G A C G T A C G T