Information for 13-CATGGMAACAGCH (Motif 18)

A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
Reverse Opposite:
C G A T A T C G A G T C C G A T C T A G A C G T A G C T A C G T A G T C A G T C C G T A A C G T A T C G
p-value:1e-10
log p-value:-2.350e+01
Information Content per bp:1.754
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.52%
Number of Background Sequences with motif175.9
Percentage of Background Sequences with motif0.38%
Average Position of motif in Targets48.6 +/- 23.1bp
Average Position of motif in Background45.5 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-CATGGMAACAGCH
SCCTAGCAACAG--
 A C G T A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G A C G T A C G T

Rfx1/MA0509.1/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CATGGMAACAGCH
GTTGCCATGGCAAC----
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
C T A G A C G T G A C T A C T G A G T C A G T C G C T A G C A T C T A G C T A G G T A C C T G A C T G A A G T C A C G T A C G T A C G T A C G T

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:3
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CATGGMAACAGCH
TTGCCATGGCAACN---
 A C G T A C G T A C G T A C G T A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
A G C T G A C T C A T G A G T C A G T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A A G T C T G A C A C G T A C G T A C G T

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----CATGGMAACAGCH
TTGCCATGGCAACC---
 A C G T A C G T A C G T A C G T A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
A G C T G A C T C A T G A G T C G A T C G C T A C G A T C T A G T C A G G T A C C T G A T C G A G A T C G T A C A C G T A C G T A C G T

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----CATGGMAACAGCH
GTTGCCATGGCAACCG--
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
C T A G A G C T G A C T C T A G A G T C A G T C G T C A C G A T T C A G T C A G G A T C C T G A T C G A G A T C T A G C T C A G A C G T A C G T

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:6
Score:0.69
Offset:-6
Orientation:reverse strand
Alignment:------CATGGMAACAGCH
KGTTGCCATGGCAAC----
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
A C T G C T A G A G C T G A C T C A T G A G T C A G T C G T C A C A G T C T A G T C A G G T A C C T G A T C G A G A T C A C G T A C G T A C G T A C G T

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer

Match Rank:7
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CATGGMAACAGCH
AATGGAAAAT---
 A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
T C G A T C G A A G C T A C T G A C T G C G T A C G T A G T C A T G C A G C A T A C G T A C G T A C G T

RFX3/MA0798.1/Jaspar

Match Rank:8
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------CATGGMAACAGCH
CGTTGCCATGGCAACN---
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
A T G C C T A G A G C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A G A T C T A C G A C G T A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:9
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---CATGGMAACAGCH
TACCATAGCAACGGT-
 A C G T A C G T A C G T A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T A C G T

RFX2/MA0600.2/Jaspar

Match Rank:10
Score:0.66
Offset:-6
Orientation:reverse strand
Alignment:------CATGGMAACAGCH
CGTTGCCATGGCAACG---
 A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T C A A C G T A C T G C T A G G T C A C T G A C G T A A G T C C G T A C T A G T A G C G C T A
A T G C C T A G G A C T G C A T C T A G A G T C A G T C C G T A G C A T T C A G T C A G G A T C C G T A C T G A A G T C T A C G A C G T A C G T A C G T