Information for 1-CRNGTGNCAC (Motif 9)

A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
Reverse Opposite:
T A C G A G C T T A C G G T C A A G T C C T G A T A G C T C G A G A C T T C A G
p-value:1e-11
log p-value:-2.553e+01
Information Content per bp:1.481
Number of Target Sequences with motif56.0
Percentage of Target Sequences with motif8.16%
Number of Background Sequences with motif1038.8
Percentage of Background Sequences with motif2.89%
Average Position of motif in Targets52.3 +/- 27.3bp
Average Position of motif in Background50.1 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HEY2/MA0649.1/Jaspar

Match Rank:1
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CRNGTGNCAC
GGCACGTGNC--
 A C G T A C G T A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
A T C G T C A G T A G C C T G A A T G C A C T G A G C T A C T G A G C T G A T C A C G T A C G T

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CRNGTGNCAC
CACGTGDC--
 A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C A C G T A C G T

HEY1/MA0823.1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CRNGTGNCAC
GGCACGTGTC--
 A C G T A C G T A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
A C T G T C A G G A T C T C G A A T G C A C T G A G C T T C A G A G C T A T G C A C G T A C G T

E-box(bHLH)/Promoter/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CRNGTGNCAC-
TCACGTGACCGG
 A C G T A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C A C G T
A G C T A G T C C G T A A G T C T C A G C G A T A C T G T C G A A T G C T A G C T A C G T A C G

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CRNGTGNCAC
RTCATGTGAC--
 A C G T A C G T A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
T C A G A G C T A T G C C G T A A G C T T C A G C A G T A C T G C T G A A G T C A C G T A C G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:CRNGTGNCAC
CACGTGNC--
 A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C A C G T A C G T

USF2/MA0526.1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CRNGTGNCAC
GTCATGTGACC-
 A C G T A C G T A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
T C A G A G C T A G T C C G T A A G C T A C T G A C G T A C T G T C G A A G T C G A T C A C G T

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CRNGTGNCAC
KCCACGTGAC--
 A C G T A C G T A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
A C T G T G A C G T A C C G T A A G T C T A C G A C G T A C T G G T C A A G T C A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CRNGTGNCAC
NNCGCGTGNN--
 A C G T A C G T A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T

Creb3l2/MA0608.1/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CRNGTGNCAC
ACACGTGGC--
 A C G T A G T C C T G A A G C T A T C G G A C T T C A G C A G T A T G C T C G A A T G C
G C T A A T G C C G T A A G T C A C T G A C G T A T C G C A T G G T A C A C G T A C G T