Information for 2-GAGCTCATCCACT (Motif 3)

A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T
Reverse Opposite:
G T C A A C T G A C G T A C T G A C T G G T C A A G C T A C T G G T C A A C T G A G T C A G C T A G T C
p-value:1e-15
log p-value:-3.629e+01
Information Content per bp:1.934
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets39.4 +/- 23.6bp
Average Position of motif in Background29.9 +/- 6.4bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF354C/MA0130.1/Jaspar

Match Rank:1
Score:0.63
Offset:6
Orientation:forward strand
Alignment:GAGCTCATCCACT
------ATCCAC-
 A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C A C G T

Crx/MA0467.1/Jaspar

Match Rank:2
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:GAGCTCATCCACT-
---CTAATCCTCTT
 A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T A C G T
A C G T A C G T A C G T G A T C C G A T C T G A C G T A A C G T A G T C G A T C A G C T G A T C G A C T A G C T

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--GAGCTCATCCACT
ATGACGTCATCN---
 A C G T A C G T A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T
T C G A G C A T A C T G C T G A A G T C T C A G G A C T G T A C C G T A A G C T A G T C G A T C A C G T A C G T A C G T

PH0115.1_Nkx2-6/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:GAGCTCATCCACT-------
----TAAGCCACTTAACATT
 A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A G T C T G A C T G A C A T G T A G C A G T C C G T A G T A C A C G T A G C T C T G A C G T A T G A C G C T A G A C T G A C T

PH0139.1_Pitx3/Jaspar

Match Rank:5
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GAGCTCATCCACT-
GNNAGCTAATCCCCCN
 A C G T A C G T A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T A C G T
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:6
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:GAGCTCATCCACT---
------MRSCACTYAA
 A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A

PH0171.1_Nkx2-1/Jaspar

Match Rank:7
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GAGCTCATCCACT-------
----TAAGCCACTTGAAATT
 A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T T C G A C T G A A T C G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T G C A G T C A G C A T G C A T

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GAGCTCATCCACT-------
---CTTAACCACTTAAGGAT
 A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T G T A C G C A T C G A T T C G A C T G A T A G C A G T C C G T A G T A C A C G T A G C T C G T A C G T A T A C G A C T G T C G A A C G T

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:9
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GAGCTCATCCACT
--GCTAATCC---
 A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T
A C G T A C G T A T C G G A T C G C A T C G T A G T C A A C G T A T G C A G T C A C G T A C G T A C G T

PH0114.1_Nkx2-5/Jaspar

Match Rank:10
Score:0.54
Offset:4
Orientation:forward strand
Alignment:GAGCTCATCCACT-------
----TAAGCCACTTGAATTT
 A C T G C T G A A C T G A G T C A C G T A G T C C T G A A C G T A G T C A G T C C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A C T C T G A C T G A C A T G T A G C A G T C G C T A G T A C A C G T G A C T T C A G C G T A T C G A G C A T G A C T A G C T