Information for 2-TCAGCASGGKGYAGCA (Motif 2)

A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
Reverse Opposite:
A C G T C A T G T G A C A C G T C T G A G T A C G T A C A G T C G T A C A T C G C G A T A C T G A T G C A C G T A T C G T G C A
p-value:1e-16
log p-value:-3.695e+01
Information Content per bp:1.758
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.46%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets36.9 +/- 19.6bp
Average Position of motif in Background68.1 +/- 14.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TCAGCASGGKGYAGCA
CACAGCAGGGGG-----
 A C G T A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCAGCASGGKGYAGCA
DCHCAGCAGGRGGCC---
 A C G T A C G T A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T A C G T A C G T

ZIC1/MA0696.1/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCAGCASGGKGYAGCA
CACAGCGGGGGGTC---
 A C G T A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:4
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCAGCASGGKGYAGCA
NCGCAGCGGGGGGTC---
 A C G T A C G T A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TCAGCASGGKGYAGCA
TGAGTCAGCA----------
 A C G T A C G T A C G T A C G T A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCAGCASGGKGYAGCA
DCTCAGCAGG--------
 A C G T A C G T A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
C A G T G T A C G C A T A G T C G C T A A C T G A G T C C T G A A C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--TCAGCASGGKGYAGCA
NCNCAGCGGGGGGTC---
 A C G T A C G T A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-TCAGCASGGKGYAGCA
GTCAGCANNTN------
 A C G T A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

CTCF/MA0139.1/Jaspar

Match Rank:9
Score:0.51
Offset:-3
Orientation:forward strand
Alignment:---TCAGCASGGKGYAGCA
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

PH0162.1_Six2/Jaspar

Match Rank:10
Score:0.51
Offset:4
Orientation:forward strand
Alignment:TCAGCASGGKGYAGCA-----
----AATGGGGTATCACGTTT
 A C G T A T G C G T C A A T C G G T A C C G T A A T G C C A T G A C T G C A T G A C T G A G C T C G T A A C T G G A T C C G T A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C T G A G C T A C A G T T C A G C T A G A C T G C T A G A C G T C T G A A C G T G A T C C T G A G A T C C A G T G C A T G A C T C A G T