Information for 6-GCGTCTGTGCTCT (Motif 11)

A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A C T G A T G C C G T A A G T C C G T A A C T G C G T A A T G C C T A G A G T C
p-value:1e-10
log p-value:-2.462e+01
Information Content per bp:1.913
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.73%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets47.8 +/- 14.6bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GCGTCTGTGCTCT-
NNGCGTGTGTGCNGCN
 A C G T A C G T A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T A C G T
C A G T A C G T C T A G T G A C C A T G A C G T T A C G A G C T C A T G A G C T A C T G A G T C A G T C C A T G A G T C G A C T

PB0026.1_Gm397_1/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCGTCTGTGCTCT----
NNGTATGTGCACATNNN
 A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T A C G T A C G T A C G T A C G T
C T G A G T A C C A T G C A G T T C G A C G A T T A C G A G C T C T A G A G T C C T G A A T G C G C T A G C A T G T A C C G A T C A T G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCGTCTGTGCTCT
VBSYGTCTGG-----
 A C G T A C G T A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GCGTCTGTGCTCT
GGNGCGNCTGTTNNN-
 A C G T A C G T A C G T A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T A C G T

PB0104.1_Zscan4_1/Jaspar

Match Rank:5
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GCGTCTGTGCTCT----
NTNTATGTGCACATNNN
 A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T A C G T A C G T A C G T A C G T
C A G T G C A T C G A T C G A T C T G A C G A T T C A G A G C T C T A G A G T C C T G A A G T C G C T A G A C T A C T G C A G T G T C A

RUNX1/MA0002.2/Jaspar

Match Rank:6
Score:0.58
Offset:2
Orientation:forward strand
Alignment:GCGTCTGTGCTCT
--GTCTGTGGTTT
 A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T
A C G T A C G T A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GCGTCTGTGCTCT
---GCTGTG----
 A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T
A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:8
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:GCGTCTGTGCTCT-
----CTGTTCCTGG
 A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T A C G T
A C G T A C G T A C G T A C G T T A G C C G A T A T C G A C G T A C G T A G T C A G T C G C A T C A T G A T C G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCGTCTGTGCTCT
CTGTCTGG-----
 A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T
A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:10
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCGTCTGTGCTCT
---GCTGTGGTTT
 A C T G A G T C A T C G A C G T A G T C A C G T A C T G A C G T A T C G A G T C C G A T A G T C A C G T
A C G T A C G T A C G T A C T G G A T C G A C T A C T G A C G T C A T G A C T G A C G T A G C T C G A T