Information for 11-AATTGGTGTGTGT (Motif 23)

C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A G T C C G T A A G T C C G T A A G T C A G T C C G T A C G T A A C G T A C G T
p-value:1e-4
log p-value:-1.085e+01
Information Content per bp:1.940
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif1.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets67.2 +/- 21.8bp
Average Position of motif in Background82.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)2.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0107.1_Msx2/Jaspar

Match Rank:1
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------AATTGGTGTGTGT
ANCGCTAATTGGTCTNN--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C A C G T A C G T

PH0006.1_Barhl2/Jaspar

Match Rank:2
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGGTGTGTGT
NNNTTAATTGGTTTTT--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
C G A T C G A T T A G C G A C T C G A T C G T A C G T A C G A T G A C T C T A G C T A G A G C T G A C T C A G T C A G T C A G T A C G T A C G T

Nobox/MA0125.1/Jaspar

Match Rank:3
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AATTGGTGTGTGT
TAATTGGT------
 A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
A G C T C G T A C G T A A C G T C A G T C T A G A T C G A G C T A C G T A C G T A C G T A C G T A C G T A C G T

MSX2/MA0708.1/Jaspar

Match Rank:4
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGTGTGTGT
NTAATTGG-------
 A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
A G C T C A G T T C G A C G T A A C G T C A G T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0007.1_Barx1/Jaspar

Match Rank:5
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----AATTGGTGTGTGT
AAAGTAATTAGTGAAT--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
G T C A G T C A T C G A T A C G G A C T T G C A G T C A A C G T A C G T C T G A A T C G A G C T C A T G G C T A C G T A G C A T A C G T A C G T

PH0005.1_Barhl1/Jaspar

Match Rank:6
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----AATTGGTGTGTGT
GNNTTAATTGGTTGTT--
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
C A T G G C T A T G C A G A C T C G A T C G T A C G T A C G A T A G C T C T A G T A C G G A C T A G C T C A T G G A C T C A G T A C G T A C G T

MSX1/MA0666.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGTGTGTGT
NTAATTGG-------
 A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
A G T C A C G T T G C A G T C A A C G T A C G T C T A G T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----AATTGGTGTGTGT
NNNNNATTGATGNGTGN
 A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
A C G T A C T G G C A T C G A T C A G T G C T A C G A T A C G T A C T G C G T A G A C T A C T G C A T G C T A G G C A T T C A G C T G A

PH0109.1_Nkx1-1/Jaspar

Match Rank:9
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------AATTGGTGTGTGT
TGCGCTAATTAGTGGGA--
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
C G A T T A C G G T A C T C A G A G T C G A C T G T C A C G T A C G A T A C G T C T G A T C A G A G C T C A T G T A C G A C T G T C G A A C G T A C G T

Msx3/MA0709.1/Jaspar

Match Rank:10
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--AATTGGTGTGTGT
NTAATTGN-------
 A C G T A C G T C G T A C G T A A C G T A C G T A C T G A C T G A C G T C T A G C G A T A C T G A C G T A C T G A C G T
A G C T G C A T C T G A C G T A A C G T A G C T C T A G A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T