Information for 7-GCAGCAAACACCA (Motif 6)

C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A
Reverse Opposite:
A G C T A C T G A T C G A G C T A T C G G A C T A G C T C G A T A C T G A G T C A C G T A C T G A G T C
p-value:1e-15
log p-value:-3.603e+01
Information Content per bp:1.803
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.23%
Number of Background Sequences with motif6.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets34.0 +/- 23.2bp
Average Position of motif in Background66.5 +/- 9.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAAACACCA--
AGCGGCACACACGCAA
 A C G T C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A A C G T A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAAACACCA
CACAGN--------
 A C G T C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GCAGCAAACACCA
-CAGCC-------
 C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A
A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0208.1_Zscan4_2/Jaspar

Match Rank:4
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAAACACCA--
CGAAGCACACAAAATA
 A C G T C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A A C G T A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A

NRL/MA0842.1/Jaspar

Match Rank:5
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAAACACCA
GTCAGCANNTN---
 A C G T C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:6
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GCAGCAAACACCA
NACAGGAAAT----
 A C G T C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A
T G C A C T G A A G T C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCAAACACCA
NACAGGAAAT----
 A C G T C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T A C G T A C G T A C G T A C G T

FOXP3/MA0850.1/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GCAGCAAACACCA
---GTAAACA---
 C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A
A C G T A C G T A C G T C T A G G A C T C G T A C T G A T C G A A G T C C T G A A C G T A C G T A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.54
Offset:-4
Orientation:reverse strand
Alignment:----GCAGCAAACACCA
TGAGTCAGCA-------
 A C G T A C G T A C G T A C G T C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GCAGCAAACACCA-
--AGGAAACAGCTG
 C T A G A G T C C G T A A C T G G T A C C G T A T C G A C T G A A T G C C T G A A T G C G T A C C T G A A C G T
A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G