Information for 12-CGGCTAGCCA (Motif 36)

A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A
Reverse Opposite:
A C G T A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C A C T G
p-value:1e-6
log p-value:-1.434e+01
Information Content per bp:1.530
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.41%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets79.0 +/- 15.5bp
Average Position of motif in Background17.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SMAD3/MA0795.1/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CGGCTAGCCA
CGTCTAGACA
 A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CGGCTAGCCA-
---BCAGACWA
 A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:CGGCTAGCCA-
-----TGCCAA
 A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.58
Offset:3
Orientation:forward strand
Alignment:CGGCTAGCCA--
---CGTGCCAAG
 A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T
A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CGGCTAGCCA----
--ACTAGCCAATCA
 A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:6
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---CGGCTAGCCA-
TGGCAGNCTGCCAG
 A C G T A C G T A C G T A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:CGGCTAGCCA
----CAGCC-
 A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.51
Offset:3
Orientation:reverse strand
Alignment:CGGCTAGCCA-
---CTTGGCAA
 A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G C T A C G T A C T G A T C G A G T C C G T A T C G A

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:forward strand
Alignment:-CGGCTAGCCA----
CCGCATAGCAACGGA
 A C G T A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A G T C A G T C T A C G A T G C G C T A G A C T T C G A C T A G G A T C C T G A T C G A A G T C T A C G T C A G C T G A

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:10
Score:0.50
Offset:-3
Orientation:forward strand
Alignment:---CGGCTAGCCA-
TGGCACCATGCCAA
 A C G T A C G T A C G T A G T C A C T G A C T G A G T C A C G T C G T A A C T G A G T C A G T C C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A