Information for 18-TGCCTCTTATAAC (Motif 26)

A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C
Reverse Opposite:
A C T G A C G T A G C T C G T A A C G T T G C A C T G A C T A G C G T A C T A G T C A G G T A C G T C A
p-value:1e-9
log p-value:-2.099e+01
Information Content per bp:1.772
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.82%
Number of Background Sequences with motif6.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets38.7 +/- 25.1bp
Average Position of motif in Background47.3 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC13/MA0907.1/Jaspar

Match Rank:1
Score:0.61
Offset:2
Orientation:forward strand
Alignment:TGCCTCTTATAAC
--GCTCGTAAAAA
 A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C
A C G T A C G T A C T G T A G C A G C T G A T C C T A G A C G T C G T A G C T A C G T A G C T A G C T A

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:2
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:TGCCTCTTATAAC
---NTTTTATGAC
 A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C
A C G T A C G T A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C

PH0046.1_Hoxa10/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGCCTCTTATAAC---
TNAATTTTATTACCTN
 A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C A C G T A C G T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:TGCCTCTTATAAC-
--CCTTTTATAGNC
 A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C A C G T
A C G T A C G T A T G C G A T C G A C T A G C T C G A T C G A T G T C A C G A T T C G A A T C G T A G C T A G C

PH0048.1_Hoxa13/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGCCTCTTATAAC--
AAACCTCGTAAAATTT
 A C G T A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C A C G T A C G T
G C T A C G T A G C T A A T C G T A G C A G C T G A T C C T A G A G C T C G T A C G T A G C T A G C T A G C A T A C G T C G A T

PH0068.1_Hoxc13/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-TGCCTCTTATAAC--
AAAGCTCGTAAAATTT
 A C G T A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C A C G T A C G T
G C A T G C T A C G T A A C T G T A G C A G C T G A T C C T A G A G C T C G T A C G T A C G T A G C T A G C A T A G C T C G A T

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGCCTCTTATAAC-
---NTTTTATTACN
 A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C A C G T
A C G T A C G T A C G T C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

PH0012.1_Cdx1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGCCTCTTATAAC----
-NAATTTTATTACCTNN
 A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C A C G T A C G T A C G T A C G T
A C G T C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

HOXC10/MA0905.1/Jaspar

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:TGCCTCTTATAAC
---NTTTTACGAC
 A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C
A C G T A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C

TBP/MA0108.2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGCCTCTTATAAC
NNNNNNCTTTTATAN-
 A C G T A C G T A C G T A C G T A C T G A G T C A G T C A C G T A G T C A G C T A C G T C G T A C G A T C T G A G T C A A G T C
A T G C T A G C A T G C A T G C A T C G A T G C A G T C G C A T G A C T C G A T G C A T C T G A G C A T T C G A A T G C A C G T