Information for 14-GGCTTTYAAGATM (Motif 20)

A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A
Reverse Opposite:
A C G T C G T A A C G T A G T C A C G T A C G T C T A G C G T A C G T A C G T A T A C G G T A C A G T C
p-value:1e-9
log p-value:-2.225e+01
Information Content per bp:1.914
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets38.4 +/- 14.2bp
Average Position of motif in Background61.7 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXC11/MA0651.1/Jaspar

Match Rank:1
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGCTTTYAAGATM
--NTTTTACGACC
 A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A
A C G T A C G T C G T A C G A T C A G T C G A T G C A T C G T A A G T C C T A G C T G A A G T C G A T C

HOXC10/MA0905.1/Jaspar

Match Rank:2
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGCTTTYAAGATM
--NTTTTACGAC-
 A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A
A C G T A C G T C G T A C G A T G C A T G C A T C G A T C G T A G A T C C A T G C T G A A G T C A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GGCTTTYAAGATM
--NTTTTACGAC-
 A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A
A C G T A C G T C G A T C G A T C G A T C G A T C G A T C G T A A G T C C T A G C G T A A G T C A C G T

Hoxa11/MA0911.1/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:GGCTTTYAAGATM
-ANTTTTACGACC
 A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A
A C G T G C T A C G T A C G A T C G A T G C A T G C A T G C T A G A T C C T A G T C G A A G T C G A T C

HOXC12/MA0906.1/Jaspar

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGCTTTYAAGATM
--NTTTTACGACC
 A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A
A C G T A C G T C G A T C A G T C G A T G C A T C G A T T C G A A G T C C A T G C T G A A G T C G A T C

TCF7L2/MA0523.1/Jaspar

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTTYAAGATM
TNCCTTTGATCTTN
 A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A
C A G T A G C T A G T C A G T C A G C T A G C T A C G T A T C G C G T A C G A T T A G C G A C T A G C T G A C T

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:GGCTTTYAAGATM
-CCTTTGATGT--
 A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A
A C G T A T G C A G T C A C G T A C G T A C G T A T C G C G T A C G A T T A C G G A C T A C G T A C G T

HOXD12/MA0873.1/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGCTTTYAAGATM
--NTTTTACGACT
 A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A
A C G T A C G T C A G T C G A T G C A T A G C T G C A T C T G A A G T C A T C G T C G A A G T C A G C T

Esrra/MA0592.2/Jaspar

Match Rank:9
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGCTTTYAAGATM--
----TTCAAGGTCAT
 A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G A C T T A G C C T G A C T G A A C T G A C T G A C G T A T G C T C G A G C A T

PH0076.1_Hoxd11/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTTYAAGATM---
ANNATTTTACGACNTNA
 A C G T A C T G A C T G A G T C A C G T A C G T A C G T A G T C C G T A C G T A A C T G C G T A C G A T G T C A A C G T A C G T A C G T
G T C A C T A G C T A G C G T A C G A T C A G T C G A T C G A T C G T A A G T C C A T G C T G A A G T C A G T C G A C T C G A T C T G A