Information for 11-CCTAAACAAGGGAGCA (Motif 15)

A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
Reverse Opposite:
C A G T A C T G A T G C A C G T A G T C A G T C G A T C A G C T A C G T C A T G A G C T A C G T A G C T C T G A A C T G A C T G
p-value:1e-11
log p-value:-2.570e+01
Information Content per bp:1.790
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif0.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets57.2 +/- 31.9bp
Average Position of motif in Background49.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox2/MA0143.3/Jaspar

Match Rank:1
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CCTAAACAAGGGAGCA
----AACAAAGG----
 A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
A C G T A C G T A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CCTAAACAAGGGAGCA
---GAACAATGGN---
 A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CCTAAACAAGGGAGCA
---RAACAATGGN---
 A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C A C G T A C G T A C G T

PB0061.1_Sox11_1/Jaspar

Match Rank:4
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CCTAAACAAGGGAGCA
ATAAGAACAAAGGACTA
 A C G T A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
G C T A A C G T C G T A C G T A C T A G T C G A C G T A A G T C C G T A G T C A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CCTAAACAAGGGAGCA
--VRAACAATGG----
 A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T A C G T A C G T

PB0121.1_Foxj3_2/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CCTAAACAAGGGAGCA
AACACCAAAACAAAGGA---
 A C G T A C G T A C G T A C G T A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
G T C A C G T A A G T C C T G A G A T C G A T C T G C A G C T A G T C A C G T A A G T C C G T A C G T A G C T A C A T G T A C G C G T A A C G T A C G T A C G T

PB0071.1_Sox4_1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCTAAACAAGGGAGCA
AGAAGAACAAAGGACTA
 A C G T A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
G T C A A C T G C T G A C G T A C T A G T C G A C G T A A G T C C G T A C G T A C G T A C T A G T C A G T C G A A G T C G C A T G C T A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:8
Score:0.60
Offset:4
Orientation:reverse strand
Alignment:CCTAAACAAGGGAGCA
----RACAAWGG----
 A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox3/MA0514.1/Jaspar

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCTAAACAAGGGAGCA
--AAAACAAAGG----
 A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T A C G T

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCTAAACAAGGGAGCA
--AAAACAATGG----
 A G T C A G T C G A C T C T G A C G T A T C G A G T A C C G T A C T G A C T A G C T A G A C T G T G C A A T C G A G T C G T C A
A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G A C G T A C G T A C G T A C G T