Information for 4-GGCAGCAGAG (Motif 3)

A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G
Reverse Opposite:
A G T C A C G T A G T C A C G T C T A G A G T C A C G T A C T G A G T C A G T C
p-value:1e-27
log p-value:-6.327e+01
Information Content per bp:1.953
Number of Target Sequences with motif35.0
Percentage of Target Sequences with motif4.07%
Number of Background Sequences with motif137.7
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets44.0 +/- 21.3bp
Average Position of motif in Background50.9 +/- 31.1bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGCAGAG
TGAGTCAGCA---
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGCAGCAGAG
CGCAGCTGCG
 A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G
T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

NRL/MA0842.1/Jaspar

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:GGCAGCAGAG-
GTCAGCANNTN
 A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G A C G T
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GGCAGCAGAG
ANCAGCTG--
 A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G
C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGCAGCAGAG
GGGAGGACNG
 A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G

Myog/MA0500.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCAGCAGAG-
GACAGCTGCAG
 A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G A C G T
T C A G T C G A A G T C C G T A A C T G T A G C A C G T A C T G T A G C C T G A T A C G

PB0041.1_Mafb_1/Jaspar

Match Rank:7
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GGCAGCAGAG--
NCTANGTCAGCAAATTT
 A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

THAP1/MA0597.1/Jaspar

Match Rank:8
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GGCAGCAGAG
TNNGGGCAG-----
 A C G T A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:9
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---GGCAGCAGAG
NGNGACAGCTGCN
 A C G T A C G T A C G T A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GGCAGCAGAG--
CACAGCAGGGGG
 A C T G A C T G A G T C C G T A A C T G A G T C C G T A C T A G C G T A C T A G A C G T A C G T
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G