Information for 4-TGGCTAWTAC (Motif 7)

C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C
Reverse Opposite:
A T C G C G A T C T G A G C A T A C G T C G T A A C T G G T A C A T G C G T C A
p-value:1e-12
log p-value:-2.908e+01
Information Content per bp:1.680
Number of Target Sequences with motif24.0
Percentage of Target Sequences with motif3.18%
Number of Background Sequences with motif214.6
Percentage of Background Sequences with motif0.45%
Average Position of motif in Targets43.5 +/- 29.9bp
Average Position of motif in Background49.6 +/- 28.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

BARX1/MA0875.1/Jaspar

Match Rank:1
Score:0.64
Offset:2
Orientation:forward strand
Alignment:TGGCTAWTAC
--GCAATTAG
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C
A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:2
Score:0.61
Offset:1
Orientation:forward strand
Alignment:TGGCTAWTAC-
-GGCCATTAAC
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C A C G T
A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C

MSX2/MA0708.1/Jaspar

Match Rank:3
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGGCTAWTAC
--CCAATTAA
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C
A C G T A C G T T A G C G A T C G T C A G T C A A C G T A G C T G T C A T C G A

BSX/MA0876.1/Jaspar

Match Rank:4
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGGCTAWTAC
--CCAATTAA
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C
A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A

MSX1/MA0666.1/Jaspar

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGGCTAWTAC
--CCAATTAG
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C
A C G T A C G T A T G C G A T C T G C A G T C A A C G T A C G T T G C A T C A G

Msx3/MA0709.1/Jaspar

Match Rank:6
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGGCTAWTAC
--CCAATTAA
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C
A C G T A C G T T A G C G A T C T C G A T G C A A C G T G A C T C G T A T C G A

EN2/MA0642.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGCTAWTAC-
-CCCAATTAGC
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C A C G T
A C G T T A G C A T G C A G T C T G C A T G C A A C G T A G C T C T G A T A C G A T G C

Dlx4/MA0881.1/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TGGCTAWTAC
--CCAATTAC
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C
A C G T A C G T T A G C G A T C G T C A G T C A G C A T A G C T G C T A G T A C

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGGCTAWTAC
--BCMATTAG
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C
A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G

Nobox/MA0125.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TGGCTAWTAC
-ACCAATTA-
 C A G T T A C G A C T G A G T C G C A T C G T A C G T A G A C T C G T A A T G C
A C G T T C G A A T G C G A T C G T C A G T C A A C G T C G A T C T G A A C G T