Information for 19-GATCACAACGGGA (Motif 38)

A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A
Reverse Opposite:
A C G T A T G C A G T C A G T C T A C G C A G T C A G T A T C G A C G T A C T G G T C A A C G T A T G C
p-value:1e-6
log p-value:-1.545e+01
Information Content per bp:1.798
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.80%
Number of Background Sequences with motif15.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets53.0 +/- 23.2bp
Average Position of motif in Background52.3 +/- 28.3bp
Strand Bias (log2 ratio + to - strand density)3.6
Multiplicity (# of sites on avg that occur together)2.17
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GATCACAACGGGA--
GAGCACAGCAGGACA
 A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A A C G T A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GATCACAACGGGA--
CCACACAGCAGGAGA
 A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A A C G T A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GATCACAACGGGA----
--DCHCAGCAGGRGGCC
 A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

PB0120.1_Foxj1_2/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GATCACAACGGGA-
ATGTCACAACAACAC
 A C G T A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A A C G T
C G T A A G C T T C A G A C G T T A G C T C G A A G T C C T G A G T C A T G A C C G T A C T G A A T G C T C G A G T A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GATCACAACGGGA--
---CACAGCAGGGGG
 A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A A C G T A C G T
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G

PB0206.1_Zic2_2/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GATCACAACGGGA--
CCACACAGCAGGAGA
 A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A A C G T A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A

Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:GATCACAACGGGA---
------AACAGGAAGT
 A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T G C A C T G A A T G C G T C A A C T G A C T G C G T A C G T A C T A G A G C T

SREBF2/MA0596.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:GATCACAACGGGA
-ATCACCCCAT--
 A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A
A C G T C T G A A C G T A G T C C G T A A T G C T A G C A G T C A T G C C G T A A G C T A C G T A C G T

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GATCACAACGGGA----
--NCNCAGCGGGGGGTC
 A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A A C G T A C G T A C G T A C G T
A C G T A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

PB0132.1_Hbp1_2/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GATCACAACGGGA---
NNTNNACAATGGGANNN
 A C G T A T C G C G T A A C G T A G T C T C G A A T G C G T C A G C T A A T G C C T A G A C T G A T C G C G T A A C G T A C G T A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A