Information for 13-KYHTRMAKCA (Motif 37)

C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A
Reverse Opposite:
C A G T A T C G G T A C G C A T C A G T A G C T C G T A C A G T T C A G G T A C
p-value:1e-6
log p-value:-1.608e+01
Information Content per bp:1.488
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif2.79%
Number of Background Sequences with motif325.7
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets43.8 +/- 24.9bp
Average Position of motif in Background49.7 +/- 29.3bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL002.1_INR/Jaspar

Match Rank:1
Score:0.66
Offset:7
Orientation:forward strand
Alignment:KYHTRMAKCA-----
-------TCAGTCTT
 C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:KYHTRMAKCA-------
TCACCCATCAATAAACA
 C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.59
Offset:0
Orientation:forward strand
Alignment:KYHTRMAKCA
TCATCAATCA
 C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A
G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:KYHTRMAKCA--
CCATCAATCAAA
 C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A A C G T A C G T
G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KYHTRMAKCA
GCCATAAATCA
 A C G T C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A
T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-KYHTRMAKCA-
GYCATCMATCAT
 A C G T C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A A C G T
T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

FOS::JUN/MA0099.2/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:KYHTRMAKCA
---TGAGTCA
 C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A
A C G T A C G T A C G T G A C T A T C G G C T A A C T G A C G T G T A C C T G A

Dux/MA0611.1/Jaspar

Match Rank:8
Score:0.56
Offset:3
Orientation:forward strand
Alignment:KYHTRMAKCA-
---CCAATCAA
 C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C G T A A C G T A G T C C G T A C G T A

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--KYHTRMAKCA
ATGCATAATTCA
 A C G T A C G T C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

PH0037.1_Hdx/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--KYHTRMAKCA-----
AAGGCGAAATCATCGCA
 A C G T A C G T C A T G A G T C G T C A G C A T T C G A G T C A C G T A C A T G T A G C G T C A A C G T A C G T A C G T A C G T A C G T
C G T A C T G A A C T G C A T G G T A C C T A G T G C A C G T A C G T A A C G T A T G C G C T A G A C T G A T C A T C G G T A C T G C A