Information for 18-GCAAAAACAATGS (Motif 35)

T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C
Reverse Opposite:
A T C G G T A C G T C A A C G T G A C T A C T G C G A T G A C T A C G T A G C T A C G T A C T G A G T C
p-value:1e-7
log p-value:-1.707e+01
Information Content per bp:1.674
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.65%
Number of Background Sequences with motif278.4
Percentage of Background Sequences with motif0.58%
Average Position of motif in Targets42.5 +/- 22.3bp
Average Position of motif in Background46.7 +/- 25.9bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox6/MA0515.1/Jaspar

Match Rank:1
Score:0.79
Offset:3
Orientation:reverse strand
Alignment:GCAAAAACAATGS
---AAAACAATGG
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C
A C G T A C G T A C G T T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:2
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:GCAAAAACAATGS
---VRAACAATGG
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C
A C G T A C G T A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:3
Score:0.75
Offset:4
Orientation:forward strand
Alignment:GCAAAAACAATGS-
----RAACAATGGN
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C A C G T
A C G T A C G T A C G T A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:4
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:GCAAAAACAATGS
---VRRACAAWGG
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C
A C G T A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:5
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GCAAAAACAATGS
---RNAACAATGG
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C
A C G T A C G T A C G T T C G A T C A G T C G A T C G A A T G C C G T A T C G A G C A T C A T G T A C G

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GCAAAAACAATGS
---AAAACAAAGG
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C
A C G T A C G T A C G T T C G A T C G A T C G A C G T A A T G C C G T A C G T A C G T A C T A G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.70
Offset:4
Orientation:reverse strand
Alignment:GCAAAAACAATGS
----GAACAATGG
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C
A C G T A C G T A C G T A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

SRY/MA0084.1/Jaspar

Match Rank:8
Score:0.70
Offset:2
Orientation:forward strand
Alignment:GCAAAAACAATGS
--GTAAACAAT--
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C
A C G T A C G T A C T G C G A T C G T A C G T A C G T A A G T C C G T A C T G A C G A T A C G T A C G T

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.69
Offset:5
Orientation:reverse strand
Alignment:GCAAAAACAATGS
-----RACAAWGG
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:GCAAAAACAATGS-
----GAACAATGGN
 T C A G G T A C G T C A T C G A C G T A C T G A C G T A T G A C C G T A C G T A C A G T A C T G T A G C A C G T
A C G T A C G T A C G T A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G