Information for 5-GRGKTCAGCAVTG (Motif 16)

A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G
Reverse Opposite:
G A T C C T G A A T G C A G C T A C T G A T G C A C G T A C T G G T C A G T A C A G T C A G C T A T G C
p-value:1e-10
log p-value:-2.485e+01
Information Content per bp:1.758
Number of Target Sequences with motif13.0
Percentage of Target Sequences with motif1.72%
Number of Background Sequences with motif57.2
Percentage of Background Sequences with motif0.12%
Average Position of motif in Targets49.9 +/- 21.9bp
Average Position of motif in Background49.4 +/- 28.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:1
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-GRGKTCAGCAVTG
AGRGGTCA------
 A C G T A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

NRL/MA0842.1/Jaspar

Match Rank:2
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GRGKTCAGCAVTG-
---GTCAGCANNTN
 A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:3
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:GRGKTCAGCAVTG
TGAGTCAGCA---
 A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G
G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:4
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-GRGKTCAGCAVTG
TRAGGTCA------
 A C G T A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0057.1_Rxra_1/Jaspar

Match Rank:5
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----GRGKTCAGCAVTG
NTNNNGGGGTCANGNNN-
 A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GRGKTCAGCAVTG
-AGGTCA------
 A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G
A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T A C G T A C G T A C G T

Mafb/MA0117.2/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:GRGKTCAGCAVTG-
--NGTCAGCANTTT
 A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G A C G T
A C G T A C G T G T C A T A C G A G C T G T A C C T G A C A T G T A G C C T G A G C A T C G A T G C A T G C A T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GRGKTCAGCAVTG
CAAAGGTCAG-----
 A C G T A C G T A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:9
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GRGKTCAGCAVTG
CTCCAGGGGTCAATTGA-
 A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T

PB0118.1_Esrra_2/Jaspar

Match Rank:10
Score:0.62
Offset:-5
Orientation:forward strand
Alignment:-----GRGKTCAGCAVTG
GGCGAGGGGTCAAGGGC-
 A C G T A C G T A C G T A C G T A C G T A T C G C T G A A C T G A C T G A C G T A G T C C G T A A T C G G T A C C T G A T A C G G A C T C T A G
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C A C G T