Information for 12-ARCCTTGACTTAAAAA (Motif 13)

G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
Reverse Opposite:
A C G T A G C T C A G T G A C T A C G T G C T A C G T A T A C G G C A T A T G C C G T A C G T A C T A G A C T G G A C T A C G T
p-value:1e-11
log p-value:-2.555e+01
Information Content per bp:1.685
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif10.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets48.4 +/- 17.7bp
Average Position of motif in Background62.8 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e1/MA0676.1/Jaspar

Match Rank:1
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:ARCCTTGACTTAAAAA
----TTGACTTTT---
 G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
A C G T A C G T A C G T A C G T C G A T A C G T T C A G C T G A G A T C G A C T G A C T G A C T C G A T A C G T A C G T A C G T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:ARCCTTGACTTAAAAA
-ACCGTGACTAATTNN
 G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
A C G T C G T A T A G C A G T C C T A G C A G T C T A G C T G A G T A C G C A T T C G A C G T A G C A T A G C T C T A G T C G A

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-ARCCTTGACTTAAAAA
TGACCTTGACCT-----
 A C G T G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:4
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ARCCTTGACTTAAAAA
TGACCTTGACCT-----
 A C G T G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T A C G T

Pax2/MA0067.1/Jaspar

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:ARCCTTGACTTAAAAA
--NCGTGACN------
 G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
A C G T A C G T T A C G G T A C C T A G A G C T T C A G C G T A G A T C C G A T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ARCCTTGACTTAAAAA
TGACCTTGAV-------
 A C G T G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nfe2l2/MA0150.2/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ARCCTTGACTTAAAAA
CAGCATGACTCAGCA-
 G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
G T A C C T G A T A C G T G A C T C G A A C G T A C T G C G T A A T G C G C A T G A T C C T G A T A C G A T G C C G T A A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-ARCCTTGACTTAAAAA
TGACCTTGAN-------
 A C G T G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:9
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---ARCCTTGACTTAAAAA
GCTGACCTTGAACTN----
 A C G T A C G T A C G T G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T A C G T A C G T A C G T A C G T

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------ARCCTTGACTTAAAAA
NNNNATGACCTTGANTN-----
 A C G T A C G T A C G T A C G T A C G T A C G T G T C A C T G A A G T C A G T C A C G T A C G T T A C G C G T A A G T C C G A T C G A T G T C A C G T A G T C A C T G A T C G A
C A G T G T A C T C A G A G T C C G T A A G C T T C A G G C T A G A T C G T A C A G C T G A C T A T C G T C G A G T C A C A G T G T C A A C G T A C G T A C G T A C G T A C G T