Information for 2-AAGCAAACCAGGACCG (Motif 4)

G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
Reverse Opposite:
G T A C A C T G A C T G A C G T T G A C A T G C A C G T A C T G A T C G A G C T A C G T A C G T C T A G A T G C G A C T A C G T
p-value:1e-12
log p-value:-2.845e+01
Information Content per bp:1.794
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.29%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets51.3 +/- 27.4bp
Average Position of motif in Background47.2 +/- 3.8bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-AAGCAAACCAGGACCG
GCAGCCAAGCGTGACN-
 A C G T G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
A C T G G A T C C T G A A T C G A G T C T A G C C T G A C G T A T A C G A G T C C T A G C A G T T C A G T C G A T G A C G A T C A C G T

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-AAGCAAACCAGGACCG
SCAGYCADGCATGAC--
 A C G T G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C A C G T A C G T

PAX5/MA0014.2/Jaspar

Match Rank:3
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----AAGCAAACCAGGACCG
GAGGGCAGCCAAGCGTGAC--
 A C G T A C G T A C G T A C G T A C G T G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
T C A G C G T A T C A G C T A G A C T G G A T C C T G A T A C G A G T C T A G C T C G A C T G A A T C G A G T C C T A G C A G T C T A G C T G A G T A C A C G T A C G T

PB0141.1_Isgf3g_2/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AAGCAAACCAGGACCG
--GCAAAACATTACTA
 G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
A C G T A C G T A C T G T A G C C G T A C G T A C G T A C T G A T A G C C G T A A C G T C A G T C G T A G T A C G A C T C T G A

p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer

Match Rank:5
Score:0.50
Offset:1
Orientation:reverse strand
Alignment:AAGCAAACCAGGACCG-----
-RRCATGYCHGGACWTGYYYN
 G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G A C G T A C G T A C G T A C G T A C G T
A C G T C T A G C T A G A G T C G C T A C G A T A C T G G A C T G A T C G A C T T C A G C T A G C T G A A T G C G C A T C G A T A C T G G A C T G A T C G A C T C G A T

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.49
Offset:-3
Orientation:forward strand
Alignment:---AAGCAAACCAGGACCG
ACTATGCCAACCTACC---
 A C G T A C G T A C G T G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
C G T A A G T C A C G T C T G A A C G T C T A G A T G C A G T C G T C A T G C A A G T C A G T C G C A T C T G A G A T C G A T C A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:7
Score:0.49
Offset:1
Orientation:reverse strand
Alignment:AAGCAAACCAGGACCG
-TGCCAA---------
 G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:8
Score:0.49
Offset:1
Orientation:forward strand
Alignment:AAGCAAACCAGGACCG
-AGCCAATCGG-----
 G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G A C G T A C G T A C G T A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.48
Offset:-1
Orientation:forward strand
Alignment:-AAGCAAACCAGGACCG
CGTGCCAAG--------
 A C G T G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PAX1/MA0779.1/Jaspar

Match Rank:10
Score:0.47
Offset:-2
Orientation:reverse strand
Alignment:--AAGCAAACCAGGACCG
NGCANTCATGCGTGACG-
 A C G T A C G T G T C A C T G A A T C G A G T C G T C A C G T A C T G A A T G C A G T C G T C A A T C G A C T G C G T A A G T C A G T C A C T G
C A G T A C T G G T A C C T G A A T C G A G C T T A G C C T G A C G A T A T C G G A T C C T A G A C G T C T A G C G T A G T A C T A C G A C G T