Information for 4-DGACTGGCRG (Motif 2)

C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G
Reverse Opposite:
A G T C G A C T A C T G A T G C T G A C C G T A T C A G A G C T A G T C G C A T
p-value:1e-14
log p-value:-3.274e+01
Information Content per bp:1.625
Number of Target Sequences with motif52.0
Percentage of Target Sequences with motif9.56%
Number of Background Sequences with motif494.2
Percentage of Background Sequences with motif2.67%
Average Position of motif in Targets47.0 +/- 28.2bp
Average Position of motif in Background53.5 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-DGACTGGCRG-
BTGABTGACAGS
 A C G T C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G A C G T
A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-DGACTGGCRG-
NTGATTGACAGN
 A C G T C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G A C G T
A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:DGACTGGCRG--
TGAGTGACAGSC
 C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G A C G T A C G T
C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

PB0195.1_Zbtb3_2/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---DGACTGGCRG---
CAATCACTGGCAGAAT
 A C G T A C G T A C G T C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G A C G T A C G T A C G T
A G T C G C T A T C G A G C A T G T A C C T G A T G A C C G A T A C T G A C T G A G T C C T G A C T A G G C T A C G T A C G A T

Myb/MA0100.2/Jaspar

Match Rank:5
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-DGACTGGCRG
CCAACTGCCA-
 A C G T C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G
A G T C G A T C C G T A C T G A A G T C C G A T A C T G G A T C G T A C G C T A A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.66
Offset:3
Orientation:forward strand
Alignment:DGACTGGCRG-
---TTGCCAAG
 C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G A C G T
A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.65
Offset:1
Orientation:forward strand
Alignment:DGACTGGCRG-
-VGCTGWCAVB
 C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G A C G T
A C G T T C A G T A C G T A G C A C G T A C T G C G A T A G T C C G T A T A C G A G T C

PB0149.1_Myb_2/Jaspar

Match Rank:8
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----DGACTGGCRG--
CGACCAACTGCCATGC
 A C G T A C G T A C G T A C G T C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G A C G T A C G T
A G T C C A T G G T C A A G T C G A T C C G T A G T C A A G T C A G C T T C A G G A T C G A T C C T G A A G C T A T C G A G T C

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:DGACTGGCRG--
TGTCTGDCACCT
 C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G A C G T A C G T
G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-DGACTGGCRG
NNNANTGA---
 A C G T C G T A T C A G T C G A A G T C G C A T A C T G T A C G T G A C C T G A T C A G
T C G A T C G A C T A G C T G A T A G C C G A T A C T G G T C A A C G T A C G T A C G T