Information for 21-TGCCAAATCTCGC (Motif 31)

A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
Reverse Opposite:
A C T G T A G C T C A G G T C A A C T G G T C A A G C T C A G T C A G T A T C G A C T G A G T C G T C A
p-value:1e-7
log p-value:-1.694e+01
Information Content per bp:1.714
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.27%
Number of Background Sequences with motif44.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets49.6 +/- 25.9bp
Average Position of motif in Background50.5 +/- 25.5bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIA/MA0670.1/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAATCTCGC
GGTGCCAAGT-----
 A C G T A C G T A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T A C G T A C G T A C G T A C G T A C G T

PB0133.1_Hic1_2/Jaspar

Match Rank:2
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----TGCCAAATCTCGC
GGGTGTGCCCAAAAGG--
 A C G T A C G T A C G T A C G T A C G T A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
C A T G A T C G C A T G C A G T C T A G A C G T C T A G A G T C A G T C G T A C G T C A C G T A C G T A G T C A C T A G T A C G A C G T A C G T

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--TGCCAAATCTCGC
CGTGCCAAG------
 A C G T A C G T A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TGCCAAATCTCGC
TGCCAA-------
 A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
G C A T C A T G G A T C A G T C G T C A C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAATCTCGC
ATGCCCACC-----
 A C G T A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T A C G T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAATCTCGC
TTGCCAAG------
 A C G T A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G A C G T A C G T A C G T A C G T A C G T A C G T

Gfi1/MA0038.1/Jaspar

Match Rank:7
Score:0.52
Offset:3
Orientation:forward strand
Alignment:TGCCAAATCTCGC
---CAAATCACTG
 A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
A C G T A C G T A C G T A G T C T G C A C G T A C G T A C A G T G T A C G C T A T A G C G C A T T A C G

Hic1/MA0739.1/Jaspar

Match Rank:8
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGCCAAATCTCGC
ATGCCAACC-----
 A C G T A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
T C G A A G C T T C A G T A G C G T A C G T C A T C G A A T G C A G T C A C G T A C G T A C G T A C G T A C G T

GFX(?)/Promoter/Homer

Match Rank:9
Score:0.51
Offset:5
Orientation:forward strand
Alignment:TGCCAAATCTCGC----
-----ATTCTCGCGAGA
 A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G A C T A G C T T G A C A G C T G T A C T C A G G A T C A T C G T G C A A C T G C T G A

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAAATCTCGC
ATGCCCGGGCATGT
 A C G T A C G T C T A G G T A C A T G C G C T A G C T A C T G A C A G T A G T C A C G T A G T C A C T G A G T C
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T