Information for 7-KCCCTGACTGGCTGGT (Motif 12)

A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
Reverse Opposite:
C G T A T A G C A G T C C T G A C T A G A G T C A T G C C G T A A C T G A C G T A G T C C G T A A T C G T A C G C A T G G T C A
p-value:1e-13
log p-value:-3.011e+01
Information Content per bp:1.788
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.99%
Number of Background Sequences with motif3.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets52.9 +/- 13.0bp
Average Position of motif in Background59.9 +/- 23.0bp
Strand Bias (log2 ratio + to - strand density)-2.8
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:KCCCTGACTGGCTGGT
GTCATGCHTGRCTGS-
 A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
A C T G A G C T A G T C G T C A A G C T T C A G A T G C G A T C G C A T A T C G T C G A T A G C C G A T C A T G T A G C A C G T

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:KCCCTGACTGGCTGGT
----TGATTGGCTANN
 A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
A C G T A C G T A C G T A C G T A G C T A T C G G C T A G C A T A C G T C T A G T A C G G A T C G A C T C T G A T C A G C A G T

NFYB/MA0502.1/Jaspar

Match Rank:3
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:KCCCTGACTGGCTGGT--
---CTGATTGGTCNATTT
 A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T A C G T A C G T
A C G T A C G T A C G T A T G C A G C T A T C G C G T A A G C T A C G T A C T G A C T G G A C T A G T C T A G C T C G A C A G T C A G T A G C T

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.60
Offset:3
Orientation:forward strand
Alignment:KCCCTGACTGGCTGGT
---CTGTCTGG-----
 A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
A C G T A C G T A C G T A T G C G A C T A C T G C A G T G A T C A C G T T A C G T A C G A C G T A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-KCCCTGACTGGCTGGT
NGTCACGCTTGGCTGC-
 A C G T A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
C T A G A C T G A G C T A G T C G T C A G A T C T C A G A T G C G C A T G A C T A T C G T C A G T A G C G A C T C T A G T G A C A C G T

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:KCCCTGACTGGCTGGT
---BTGABTGACAGS-
 A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
A C G T A C G T A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C A C G T

NFY(CCAAT)/Promoter/Homer

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:KCCCTGACTGGCTGGT
---CCGATTGGCT---
 A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
A C G T A C G T A C G T A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T A C G T A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-KCCCTGACTGGCTGGT
NNTNNTGTCTGGNNTNG
 A C G T A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
C A G T A T C G C G A T T C A G T G C A G A C T A C T G C A G T A G T C A C G T T C A G T C A G G C T A G C A T C G A T G A C T C A T G

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:KCCCTGACTGGCTGGT
---NTGATTGACAGN-
 A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
A C G T A C G T A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G A C G T

NFYA/MA0060.2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---KCCCTGACTGGCTGGT
AGAGTGCTGATTGGTCCA-
 A C G T A C G T A C G T A C G T G A T C A T G C A T G C A C G T A C T G G T C A A G T C A C G T A T C G A C T G A G T C A G C T A C T G A C T G C G A T
G C T A C A T G T G C A T A C G G A C T A C T G A G T C A G C T A T C G C T G A A G C T C G A T T C A G T A C G G A C T A G T C T A G C T C G A A C G T