Information for 12-CGTGCGGCTGCTG (Motif 18)

A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A A C T G T A G C C G T A C T A G A G T C G T A C A C T G A G T C C G T A A G T C A C T G
p-value:1e-8
log p-value:-1.940e+01
Information Content per bp:1.905
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif3.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets77.2 +/- 14.2bp
Average Position of motif in Background55.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGGCTGCTG
RTACGTGC--------
 A C G T A C G T A C G T A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CGTGCGGCTGCTG
GGACGTGC--------
 A C G T A C G T A C G T A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:CGTGCGGCTGCTG--
---NNAGCAGCTGCT
 A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:4
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CGTGCGGCTGCTG----
--AGATGCTRCTRCCHT
 A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C G T A T C A G T G C A C G A T C T A G T G A C G A C T C T A G A G T C G A C T C T A G A G T C G A T C G C T A G A C T

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CGTGCGGCTGCTG--
GGNGCGNCTGTTNNN
 A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G A C G T A C G T
C T A G A C T G G A C T A T C G A T G C A T C G A C T G G A T C A G C T C T A G A C G T A G C T A C T G A T G C A G C T

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:6
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CGTGCGGCTGCTG
TACGTGCV-------
 A C G T A C G T A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G
A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

GCM1/MA0646.1/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGTGCGGCTGCTG
CATGCGGGTAC--
 A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G
A G T C T C G A G C A T T C A G G T A C C A T G A C T G A T C G A G C T T C G A A T G C A C G T A C G T

Hes1/MA1099.1/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----CGTGCGGCTGCTG
NNCGCGTGNN-------
 A C G T A C G T A C G T A C G T A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G
C A T G C T G A T G A C C T A G A G T C T C A G G A C T C T A G A T G C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CGTGCGGCTGCTG-
----CAGCAGCTGN
 A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Ascl2/MA0816.1/Jaspar

Match Rank:10
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CGTGCGGCTGCTG
--AGCAGCTGCT-
 A G T C A C T G A C G T A C T G A G T C A C T G A C T G A G T C C G A T A C T G A G T C A C G T A C T G
A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T