Information for 9-AAGCAGGCCAGCT (Motif 11)

C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
Reverse Opposite:
G T C A A C T G A G T C A C G T A C T G C A T G A G T C A G T C A C G T A C T G A G T C A C G T A C G T
p-value:1e-13
log p-value:-3.043e+01
Information Content per bp:1.928
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif1.5
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets65.2 +/- 22.1bp
Average Position of motif in Background50.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AAGCAGGCCAGCT
AAYTAGGTCA---
 C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AAGCAGGCCAGCT
TATAAGTAGGTCAA--
 A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AAGCAGGCCAGCT
ATCAAGGTCA---
 C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.57
Offset:4
Orientation:forward strand
Alignment:AAGCAGGCCAGCT
----AGGTCA---
 C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T A C G T

PB0205.1_Zic1_2/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AAGCAGGCCAGCT
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
A G T C G T A C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.55
Offset:2
Orientation:forward strand
Alignment:AAGCAGGCCAGCT
--TRAGGTCA---
 C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
A C G T A C G T G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:7
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:AAGCAGGCCAGCT----
-------HCAGCTGDTN
 C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T C A A G T C C G T A A C T G G T A C G C A T C T A G C G A T A C G T C A G T

PB0206.1_Zic2_2/Jaspar

Match Rank:8
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AAGCAGGCCAGCT
CCACACAGCAGGAGA---
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
G A T C G A T C C G T A T G A C T C G A A G T C G C T A C T A G A G T C C T G A A C T G A C T G G T C A T C A G C G T A A C G T A C G T A C G T

NR4A2/MA0160.1/Jaspar

Match Rank:9
Score:0.54
Offset:3
Orientation:forward strand
Alignment:AAGCAGGCCAGCT
---AAGGTCAC--
 C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
A C G T A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

PB0207.1_Zic3_2/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----AAGCAGGCCAGCT
GAGCACAGCAGGACA---
 A C G T A C G T A C G T A C G T A C G T C G T A C G T A A C T G A G T C C G T A A C T G A C T G G A T C A G T C C G T A A C T G A G T C A C G T
C A T G C G T A C T A G T G A C C T G A A G T C C G T A C T A G A G T C C T G A A C T G A C T G G T C A T A G C C G T A A C G T A C G T A C G T