Information for 20-RCGCACGGAGCAGCTK (Motif 29)

C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G
Reverse Opposite:
G T A C G T C A A C T G A G T C C G A T A T C G A T G C A C G T A G T C A G T C A T C G A C G T A C T G A T G C A T C G G A T C
p-value:1e-8
log p-value:-2.024e+01
Information Content per bp:1.735
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets47.8 +/- 19.5bp
Average Position of motif in Background34.3 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:RCGCACGGAGCAGCTK
-----CGGAGC-----
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A T G C A C T G A C T G C G T A A C T G A G T C A C G T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:2
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:RCGCACGGAGCAGCTK-----
----NNNNAGCAGCTGCTGAN
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:3
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:RCGCACGGAGCAGCTK--
------NNAGCAGCTGCT
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C A G T A G C C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:4
Score:0.56
Offset:8
Orientation:forward strand
Alignment:RCGCACGGAGCAGCTK
--------ANCAGCTG
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G G T A C G C T A A C T G T G A C G C A T C A T G

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:RCGCACGGAGCAGCTK-
-------CAGCAGCTGN
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C T C G A T C A G A G T C C G T A A T C G A T G C A C G T A C T G A G C T

Ascl2/MA0816.1/Jaspar

Match Rank:6
Score:0.55
Offset:8
Orientation:reverse strand
Alignment:RCGCACGGAGCAGCTK--
--------AGCAGCTGCT
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T

Myod1/MA0499.1/Jaspar

Match Rank:7
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:RCGCACGGAGCAGCTK--
-----NGNGACAGCTGCN
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A

NHLH1/MA0048.2/Jaspar

Match Rank:8
Score:0.53
Offset:8
Orientation:reverse strand
Alignment:RCGCACGGAGCAGCTK--
--------CGCAGCTGCG
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:9
Score:0.52
Offset:8
Orientation:forward strand
Alignment:RCGCACGGAGCAGCTK
--------AACAGCTG
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C C G T A C T A G T A G C A C G T A C T G

Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer

Match Rank:10
Score:0.52
Offset:7
Orientation:forward strand
Alignment:RCGCACGGAGCAGCTK-
-------BAACAGCTGT
 C T A G A T G C A T C G G T A C G T C A A T G C C T A G A C T G G T C A T A C G A T G C G C T A A C T G G T A C A C G T A C T G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T C G A A G T C G T C A T A C G A T G C A C G T A C T G A G C T