Information for 5-GCAGCATAGTGCAGCA (Motif 6)

A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A
Reverse Opposite:
A C G T A C T G A G T C A C G T A C T G A G T C G T C A A G T C A C G T T C G A A C G T A C T G A G T C A C G T A T C G A G T C
p-value:1e-15
log p-value:-3.660e+01
Information Content per bp:1.927
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.84%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 20.4bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.51
Offset:4
Orientation:forward strand
Alignment:GCAGCATAGTGCAGCA
----CAAAGGTCAG--
 A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:2
Score:0.48
Offset:-3
Orientation:forward strand
Alignment:---GCAGCATAGTGCAGCA
CANAGNNCAAAGTCCA---
 A C G T A C G T A C G T A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:3
Score:0.48
Offset:-2
Orientation:forward strand
Alignment:--GCAGCATAGTGCAGCA
AGAGTCCAAAGTCCA---
 A C G T A C G T A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T

Nfe2l2/MA0150.2/Jaspar

Match Rank:4
Score:0.47
Offset:1
Orientation:forward strand
Alignment:GCAGCATAGTGCAGCA
-CAGCATGACTCAGCA
 A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A
A C G T G T A C C T G A T A C G T G A C T C G A A C G T A C T G C G T A A T G C G C A T G A T C C T G A T A C G A T G C C G T A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.47
Offset:-3
Orientation:reverse strand
Alignment:---GCAGCATAGTGCAGCA-
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.46
Offset:11
Orientation:forward strand
Alignment:GCAGCATAGTGCAGCA
-----------CAGCC
 A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:7
Score:0.46
Offset:7
Orientation:reverse strand
Alignment:GCAGCATAGTGCAGCA-
-------ATTGCATCAK
 A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C G T A C G T C T A G A G T C T C G A G C A T G T A C C T G A A C G T

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:8
Score:0.46
Offset:-5
Orientation:forward strand
Alignment:-----GCAGCATAGTGCAGCA
NTNATGCAAYMNNHTGMAAY-
 A C G T A C G T A C G T A C G T A C G T A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A
T G C A G C A T C G A T C G T A C A G T A C T G G T A C C G T A C T G A A G C T G T C A A C T G C T A G G T C A C G A T A C T G G T A C T G C A C G T A A G C T A C G T

NRL/MA0842.1/Jaspar

Match Rank:9
Score:0.46
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCATAGTGCAGCA
GTCAGCANNTN------
 A C G T A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A
T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T A C G T A C G T A C G T A C G T A C G T A C G T

ATF4/MA0833.1/Jaspar

Match Rank:10
Score:0.46
Offset:6
Orientation:reverse strand
Alignment:GCAGCATAGTGCAGCA---
------TATTGCATCATCC
 A C T G A T G C C G T A C T A G A G T C C G T A A C G T G T C A A C T G C A G T A C T G T A G C C G T A A C T G A G T C C G T A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A C G A T C A G T C T A G G T A C T C G A C G A T G A T C G T C A A C G T G T A C G A T C