Information for 17-AGGGCAAGTTCCCTGA (Motif 25)

C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A
Reverse Opposite:
A C G T A G T C C G T A A C T G A C T G A C T G C G T A C G T A A G T C A C G T A C G T A C T G T A G C A G T C A G T C A C G T
p-value:1e-8
log p-value:-1.974e+01
Information Content per bp:1.917
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif0.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.8 +/- 19.5bp
Average Position of motif in Background9.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.59
Offset:0
Orientation:forward strand
Alignment:AGGGCAAGTTCCCTGA
AAGGCAAGTGT-----
 C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A
T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:AGGGCAAGTTCCCTGA
AGGTCAAGGTCA----
 C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A
T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A A C G T A C G T A C G T A C G T

PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.56
Offset:2
Orientation:forward strand
Alignment:AGGGCAAGTTCCCTGA
--GTCACGCTCNCTGA
 C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A
A C G T A C G T A C T G G A C T A G T C C T G A G A T C T C A G A T G C G A C T A G T C A T G C T A G C A G C T A T C G T G C A

NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGGGCAAGTTCCCTGA
--GGGAAATCCCCN--
 C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A
A C G T A C G T C A T G C T A G C T A G C T G A G C T A C G T A A G C T G A T C G T A C G T A C G T A C G C A T A C G T A C G T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:AGGGCAAGTTCCCTGA
--GGGAATTTCC----
 C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A
A C G T A C G T A C T G C T A G A C T G C T G A T C G A C G A T A G C T C G A T G T A C G T A C A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:6
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AGGGCAAGTTCCCTGA
AGGTCAAGGTCA----
 C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A
C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A A C G T A C G T A C G T A C G T

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:7
Score:0.55
Offset:6
Orientation:forward strand
Alignment:AGGGCAAGTTCCCTGA-
------ATTTCCAAGAA
 C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C T G A A G C T A C G T A G C T A G T C G A T C G T C A C T G A A C T G G C T A C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--AGGGCAAGTTCCCTGA
TRAGGTCA----------
 A C G T A C G T C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.51
Offset:-3
Orientation:reverse strand
Alignment:---AGGGCAAGTTCCCTGA
GAAAGTGAAAGT-------
 A C G T A C G T A C G T C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

STAT1/MA0137.3/Jaspar

Match Rank:10
Score:0.51
Offset:7
Orientation:reverse strand
Alignment:AGGGCAAGTTCCCTGA--
-------TTTCCTGGAAA
 C G T A A C T G A C T G A T C G A G T C C G T A C G T A C T A G C G A T A C G T A G T C G T A C G T A C C G A T A C T G C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G A C T A C G T A G C T G T A C A G T C G A C T C T A G A C T G T G C A C T G A T G C A