Information for 7-CTAGGTCAGC (Motif 7)

A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C
Reverse Opposite:
A C T G A T G C C G A T A C T G G T C A A T G C G T A C C G A T C G T A C T A G
p-value:1e-14
log p-value:-3.231e+01
Information Content per bp:1.805
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif3.43%
Number of Background Sequences with motif206.6
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets46.4 +/- 24.1bp
Average Position of motif in Background47.5 +/- 33.5bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTCAGC
AAYTAGGTCA--
 A C G T A C G T A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C
G C T A C G T A A G T C A C G T T C G A T A C G A C T G A G C T A G T C T C G A A C G T A C G T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.74
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGTCAGC
TATAAGTAGGTCAA-
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C
C G A T C G T A C G A T G T C A C G T A A T C G A C G T C T G A A C T G A C T G A C G T A G T C C G T A T C G A A C G T

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTCAGC
ATCAAGGTCA--
 A C G T A C G T A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTAGGTCAGC
--AGGTCA--
 A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C
A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A A C G T A C G T

PB0041.1_Mafb_1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-CTAGGTCAGC------
NCTANGTCAGCAAATTT
 A C G T A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T G A T C A G C T C G T A G C T A T C A G A C G T G T A C C G T A C A T G G A T C C G T A G T C A C G T A G C A T G A C T C G A T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CTAGGTCAGC
TCAAGGTCAN-
 A C G T A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTAGGTCAGC-
-TGAGTCAGCA
 A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C A C G T
A C G T G A C T T A C G C G T A T A C G G A C T G T A C G C T A C T A G A G T C C T G A

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTAGGTCAGC
BTCAAGGTCA--
 A C G T A C G T A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CTAGGTCAGC
TRAGGTCA--
 A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

Nr5a2/MA0505.1/Jaspar

Match Rank:10
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGTCAGC
AAGTTCAAGGTCAGC
 A C G T A C G T A C G T A C G T A C G T A G T C A C G T C G T A A C T G A T C G A C G T A G T C C G T A A T C G G T A C
T C G A C T G A C T A G A G C T G A C T T A G C G T C A C T G A C T A G A C T G G A C T A G T C C G T A A C T G A T G C