Information for 9-MTTSCAGMCAAGK (Motif 12)

G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T
Reverse Opposite:
G T C A A G T C A C G T A C G T A C T G A C T G A G T C A C G T A C T G A T C G C G T A C T G A A C G T
p-value:1e-11
log p-value:-2.564e+01
Information Content per bp:1.873
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.69%
Number of Background Sequences with motif0.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets31.6 +/- 25.9bp
Average Position of motif in Background40.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:MTTSCAGMCAAGK
---BCAGACWA--
 G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:MTTSCAGMCAAGK--
----AAGGCAAGTGT
 G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:MTTSCAGMCAAGK---
-TCCCAGMCRAGCCCC
 G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:MTTSCAGMCAAGK
---CCAGACAG--
 G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:MTTSCAGMCAAGK
ATGCCAGACN---
 G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:MTTSCAGMCAAGK
---CCAGACRSVB
 G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--MTTSCAGMCAAGK--
CAAATCCAGACATCACA
 A C G T A C G T G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

E2F8/MA0865.1/Jaspar

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:MTTSCAGMCAAGK
TTTCCCGCCAAA-
 G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T
G A C T A G C T A C G T A G T C A G T C A T G C T A C G A G T C T A G C C T G A C G T A G C T A A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:MTTSCAGMCAAGK
TTTCCCGCCMAV-
 G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T
C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C A C G T

E2F7/MA0758.1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-MTTSCAGMCAAGK
TTTTCCCGCCAAAA
 A C G T G T C A A G C T C G A T A T G C A G T C C G T A A C T G G T A C A G T C C G T A C G T A A C T G A C G T
C G A T C G A T A G C T A G C T A T G C A T G C A G T C T C A G A G T C A T G C C G T A C G T A G C T A C G T A