Information for 9-CTGAAAAAGGAGA (Motif 7)

A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A
Reverse Opposite:
A C G T A T G C A G C T A G T C A G T C A G C T A C G T A C G T C G A T A C G T A G T C C G T A A C T G
p-value:1e-10
log p-value:-2.511e+01
Information Content per bp:1.933
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.63%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets27.2 +/- 9.2bp
Average Position of motif in Background49.1 +/- 20.6bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SA0001.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CTGAAAAAGGAGA----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A A C G T A C G T A C G T A C G T
G C T A G C T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A T C G A T C G A T C G A C T G A C T G A

SA0002.1_at_AC_acceptor/Jaspar

Match Rank:2
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTGAAAAAGGAGA----
NNCCTGNAAAAAAAAAAAAA
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A A C G T A C G T A C G T A C G T
G C T A C G T A A G T C A G T C A C G T C T A G C T G A C T G A C T G A C T G A C T G A T C G A T C G A T C G A T C G A C T G A C T G A C T G A T C G A C T G A

PB0166.1_Sox12_2/Jaspar

Match Rank:3
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---CTGAAAAAGGAGA
AAACAGACAAAGGAAT
 A C G T A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A
T G C A T G C A C G T A A G C T C T G A A T C G C G T A A G T C G C T A T C G A G C T A T A C G T C A G T G C A C G T A G A C T

PB0137.1_Irf3_2/Jaspar

Match Rank:4
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CTGAAAAAGGAGA--
-GGAGAAAGGTGCGA
 A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A A C G T A C G T
A C G T C T A G C A T G C G T A C T A G C G T A G C T A C G T A A T C G T A C G C G A T A T C G A G T C C T A G C T G A

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:5
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTGAAAAAGGAGA
--RACAAWGG---
 A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G A C G T A C G T A C G T

Sox2/MA0143.3/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CTGAAAAAGGAGA
--AACAAAGG---
 A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G A C G T A C G T A C G T

PB0033.1_Irf3_1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:CTGAAAAAGGAGA---
--GAGAACCGAAACTG
 A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A A C G T A C G T A C G T
A C G T A C G T A C T G C T G A C T A G C G T A G C T A G T A C T A G C C T A G T C G A G C T A G C T A A T G C G A C T C T A G

TATA-Box(TBP)/Promoter/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--CTGAAAAAGGAGA
GNCTATAAAAGG---
 A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A
A T C G A T C G A T G C A G C T G C T A A C G T C G T A C G T A C T G A C T G A C T A G T A C G A C G T A C G T A C G T

PB0022.1_Gata5_1/Jaspar

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CTGAAAAAGGAGA
TAAACTGATAAGAAGAT
 A C G T A C G T A C G T A C G T A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A
G C A T C G T A C G T A C T G A A G T C G C A T A C T G C G T A C G A T G C T A C G T A T A C G T C G A T C G A C A T G C G T A C A G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:10
Score:0.55
Offset:2
Orientation:forward strand
Alignment:CTGAAAAAGGAGA-
--GWAAYHTGAKMC
 A G T C A C G T A C T G C G T A C G T A C G T A C G T A C T G A A C T G A C T G C T G A A T C G C G T A A C G T
A C G T A C G T C T A G C G T A G T C A C G T A A G T C G A T C A G C T C T A G C G T A A C G T G T C A G A T C