Information for 6-CTGCTCTCCAGGTGGY (Motif 12)

A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C
Reverse Opposite:
C T A G A T G C A G T C G T C A A G T C G T A C A G C T A T C G A T C G C G T A A C T G C T G A C T A G G T A C C T G A A T C G
p-value:1e-9
log p-value:-2.231e+01
Information Content per bp:1.713
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.13%
Number of Background Sequences with motif21.5
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets49.8 +/- 16.4bp
Average Position of motif in Background49.3 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:1
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTGCTCTCCAGGTGGY-
--DCHCAGCAGGRGGCC
 A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C A C G T
A C G T A C G T C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C

ZIC4/MA0751.1/Jaspar

Match Rank:2
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTGCTCTCCAGGTGGY-
--NCNCAGCGGGGGGTC
 A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C A C G T
A C G T A C G T C A T G T G A C C T G A G A T C G T C A T C A G G A T C C T A G C A T G C A T G C A T G C A T G C A T G A G C T T G A C

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTGCTCTCCAGGTGGY
---CACAGCAGGGGG-
 A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C
A C G T A C G T A C G T T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T

Twist(bHLH)/HMLE-TWIST1-ChIP-Seq(Chang_et_al)/Homer

Match Rank:4
Score:0.58
Offset:-5
Orientation:reverse strand
Alignment:-----CTGCTCTCCAGGTGGY
NVCAKCTGGNNNCCAGMTGB-
 A C G T A C G T A C G T A C G T A C G T A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C
T A C G T G A C T G A C C G T A A C T G T A G C C G A T A C T G A T C G A G C T A T G C T C G A T A G C G T A C C G T A A C T G T G A C G C A T A C T G A C T G A C G T

ZIC3/MA0697.1/Jaspar

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTGCTCTCCAGGTGGY-
--NCGCAGCGGGGGGTC
 A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C A C G T
A C G T A C G T C A T G G T A C C T A G G A T C T G C A T C A G A G T C C T A G A C T G A C T G C A T G C A T G C A T G A G C T T G A C

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CTGCTCTCCAGGTGGY----
-TGGCCACCAGGGGGCGCTA
 A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:7
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:CTGCTCTCCAGGTGGY
------NNCAGGTGNN
 A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T C A G T T A C G A G T C C G T A A C T G A C T G A C G T A C T G A C G T T A C G

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CTGCTCTCCAGGTGGY-----
-TGGCCACCAGGTGGCACTNT
 A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C A C G T A C G T A C G T A C G T A C G T
A C G T G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

FIGLA/MA0820.1/Jaspar

Match Rank:9
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:CTGCTCTCCAGGTGGY
------AACAGGTGNT
 A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C
A C G T A C G T A C G T A C G T A C G T A C G T G C T A T G C A G T A C G C T A A T C G A T C G C A G T C T A G C A T G C G A T

ZIC1/MA0696.1/Jaspar

Match Rank:10
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTGCTCTCCAGGTGGY-
---CACAGCGGGGGGTC
 A T G C A G C T A C T G A G T C A G C T G T A C G C A T A T G C A T G C C T G A A C T G C T A G A C G T C T A G A T C G G A T C A C G T
A C G T A C G T A C G T T G A C C T G A A G T C T G C A T C A G A G T C C T A G C A T G T C A G C A T G C A T G C A T G A G C T T G A C